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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Variant 2 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pxb_B_G130_G131AAAAA00490.23AA00
022pxb_B_G131_U132AAAAA08820.20AA08
032pxb_B_U132_G133AAAAA00600.20AA00
042pxb_B_G133_C134AAAAA00890.15AA00
052pxb_B_C134_U135AAAAA00800.13AA00
062pxb_B_U135_G136AAAAA00880.12AA00
072pxb_B_G136_U137AAAAA00730.26AA00
082pxb_B_U137_U138AAAAA00870.11AA00
092pxb_B_U138_U139AAAAA00500.24AA00
102pxb_B_U139_A140NANNANT01.41OP17
112pxb_B_A140_C141AAAAA08380.27AA08
122pxb_B_C141_C142AAAAA09140.51AA09
132pxb_B_C142_A143NANNANT01.15OP05
142pxb_B_A143_G144NANNANT00.67OP29
152pxb_B_G144_G145AAAAA00560.21AA00
162pxb_B_G145_U146AAAAA00840.23AA00
172pxb_B_U146_C147AAAAA08630.48AA08
182pxb_B_C147_A148AAuAA13820.24AA13
192pxb_B_A148_G149AAAAA08150.54AA08
202pxb_B_G149_G150AAAAA00510.36AA00
212pxb_B_G150_U151AAAAA00810.26AA00
222pxb_B_U151_C152AAAAA00780.22AA00
232pxb_B_C152_C153AAAAA00840.11AA00
242pxb_B_C153_G154AAAAA00820.26AA00
252pxb_B_G154_A155OPNOP03850.13OP03
262pxb_B_A155_A156AAAAA08770.29AA08
272pxb_B_A156_A157AAAAA00300.35AA00
282pxb_B_A157_G158AAwAA05810.25AA05
292pxb_B_G158_G159AAwAA01650.25AA01
302pxb_B_G159_A160AAAAA08680.25AA08
312pxb_B_A160_A161AAAAA08870.21AA08
322pxb_B_A161_G162AAAAA00240.50AA00
332pxb_B_G162_C163AAuAA12790.44AA12
342pxb_B_C163_A164AAAAA08780.18AA08
352pxb_B_A164_G165AAAAA00530.44AA00
362pxb_B_G165_C166AAAAA00590.31AA00
372pxb_B_C166_C167AAAAA00870.13AA00
382pxb_B_C167_A168AAAAA00360.40AA00
392pxb_B_A168_A169AAAAA00400.30AA00
402pxb_B_A169_G170AAAAA00860.10AA00
412pxb_B_G170_G171AAAAA00790.22AA00
422pxb_B_G171_C172AAAAA00610.28AA00
432pxb_B_C172_A173AAwAA01950.13AA01
442pxb_B_A173_G174AAAAA00710.18AA00
452pxb_B_G174_U175AAAAA00940.09AA00
462pxb_B_U175_G176AAAAA00750.20AA00
472pxb_B_G176_C177AAAAA00830.17AA00
482pxb_B_C177_C178AAAAA00600.22AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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