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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pwt_A_G2_C3AAwAA01600.31AA01
022pwt_A_C3_G4AAAAA08820.19AA08
032pwt_A_G4_U5AAwAA01600.26AA01
042pwt_A_U5_C6AAAAA00730.16AA00
052pwt_A_C6_A7AAAAA00780.20AA00
062pwt_A_A7_C8AAAAA00860.24AA00
072pwt_A_C8_A9AAAAA00960.12AA00
082pwt_A_A9_C10AAAAA00630.22AA00
092pwt_A_C10_C11AAAAA00860.18AA00
102pwt_A_C11_G12AAAAA00950.10AA00
112pwt_A_G12_G13AAAAA00900.15AA00
122pwt_A_G13_U14AAAAA00890.16AA00
132pwt_A_U14_G15AAAAA00930.12AA00
142pwt_A_G15_A16NANNANT01.34OP29
152pwt_A_A16_A17AAAAA00770.21AA00
162pwt_A_A17_G18NANNANT00.86OP30
172pwt_A_G18_U19AAAAA00390.29AA00
182pwt_A_U19_C20AAAAA00930.14AA00
192pwt_A_C20_G21AAAAA00930.18AA00
202pwt_A_G21_C22AAAAA00800.29AA00
212pwt_B_G24_C25AAAAA00620.26AA00
222pwt_B_C25_G26AAAAA00750.21AA00
232pwt_B_G26_U27AAwAA01610.45AA01
242pwt_B_U27_C28AAwAA01120.44AA01
252pwt_B_C28_A29AAAAA08620.33AA08
262pwt_B_A29_C30AAAAA00890.23AA00
272pwt_B_C30_A31AAAAA00970.14AA00
282pwt_B_A31_C32AAAAA00900.12AA00
292pwt_B_C32_C33AAAAA00850.19AA00
302pwt_B_C33_G34AAwAA01860.17AA01
312pwt_B_G34_G35AAAAA00860.18AA00
322pwt_B_G35_U36AAAAA00870.10AA00
332pwt_B_U36_G37AAAAA00850.15AA00
342pwt_B_G37_A38NANNANT01.36IC07
352pwt_B_A38_A39AAAAA09670.21AA09
362pwt_B_A39_G40NANNANT00.90OP11
372pwt_B_G40_U41NANNANT00.66AA12
382pwt_B_U41_C42AAAAA00950.11AA00
392pwt_B_C42_G43AAAAA00870.18AA00
402pwt_B_G43_C44AAAAA00900.14AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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