DNATCO v3.2: results

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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	2pwt_A_G2_C3	AAw	AA01	60	0.31	AA01
02	2pwt_A_C3_G4	AAA	AA08	82	0.19	AA08
03	2pwt_A_G4_U5	AAw	AA01	60	0.26	AA01
04	2pwt_A_U5_C6	AAA	AA00	73	0.16	AA00
05	2pwt_A_C6_A7	AAA	AA00	78	0.20	AA00
06	2pwt_A_A7_C8	AAA	AA00	86	0.24	AA00
07	2pwt_A_C8_A9	AAA	AA00	96	0.12	AA00
08	2pwt_A_A9_C10	AAA	AA00	63	0.22	AA00
09	2pwt_A_C10_C11	AAA	AA00	86	0.18	AA00
10	2pwt_A_C11_G12	AAA	AA00	95	0.10	AA00
11	2pwt_A_G12_G13	AAA	AA00	90	0.15	AA00
12	2pwt_A_G13_U14	AAA	AA00	89	0.16	AA00
13	2pwt_A_U14_G15	AAA	AA00	93	0.12	AA00
14	2pwt_A_G15_A16	NAN	NANT	0	1.34	OP29
15	2pwt_A_A16_A17	AAA	AA00	77	0.21	AA00
16	2pwt_A_A17_G18	NAN	NANT	0	0.86	OP30
17	2pwt_A_G18_U19	AAA	AA00	39	0.29	AA00
18	2pwt_A_U19_C20	AAA	AA00	93	0.14	AA00
19	2pwt_A_C20_G21	AAA	AA00	93	0.18	AA00
20	2pwt_A_G21_C22	AAA	AA00	80	0.29	AA00
21	2pwt_B_G24_C25	AAA	AA00	62	0.26	AA00
22	2pwt_B_C25_G26	AAA	AA00	75	0.21	AA00
23	2pwt_B_G26_U27	AAw	AA01	61	0.45	AA01
24	2pwt_B_U27_C28	AAw	AA01	12	0.44	AA01
25	2pwt_B_C28_A29	AAA	AA08	62	0.33	AA08
26	2pwt_B_A29_C30	AAA	AA00	89	0.23	AA00
27	2pwt_B_C30_A31	AAA	AA00	97	0.14	AA00
28	2pwt_B_A31_C32	AAA	AA00	90	0.12	AA00
29	2pwt_B_C32_C33	AAA	AA00	85	0.19	AA00
30	2pwt_B_C33_G34	AAw	AA01	86	0.17	AA01
31	2pwt_B_G34_G35	AAA	AA00	86	0.18	AA00
32	2pwt_B_G35_U36	AAA	AA00	87	0.10	AA00
33	2pwt_B_U36_G37	AAA	AA00	85	0.15	AA00
34	2pwt_B_G37_A38	NAN	NANT	0	1.36	IC07
35	2pwt_B_A38_A39	AAA	AA09	67	0.21	AA09
36	2pwt_B_A39_G40	NAN	NANT	0	0.90	OP11
37	2pwt_B_G40_U41	NAN	NANT	0	0.66	AA12
38	2pwt_B_U41_C42	AAA	AA00	95	0.11	AA00
39	2pwt_B_C42_G43	AAA	AA00	87	0.18	AA00
40	2pwt_B_G43_C44	AAA	AA00	90	0.14	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

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