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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pue_B_DT699_DA700BBBBB0090.39BB00
022pue_B_DA700_DC701NANNANT00.68AA04
032pue_B_DC701_DG702NANNANT00.40AB03
042pue_B_DG702_DC703BBwBB02230.39BB02
052pue_B_DC703_DA704BBBBB00100.41BB00
062pue_B_DA704_DA705BB2BB07640.19BB07
072pue_B_DA705_DA706B-ABA08610.41BA08
082pue_B_DA706_DC707B-ABA08160.41BA08
092pue_B_DC707_DG708NANNANT00.63AB03
102pue_B_DG708_DT709B-ABA10630.33BA10
112pue_B_DT709_DT710NANNANT00.46AB04
122pue_B_DT710_DT711miBBB15210.36BB15
132pue_B_DT711_DG712BB2BB07730.26BB07
142pue_B_DG712_DC713NANNANT00.45BB05
152pue_B_DC713_DG714NANNANT00.53BB02
162pue_B_DG714_DT715NANNANT00.43BB15
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers
δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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