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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

D-(GGTATACC) under 0.55 GPa hydrostatic pressure

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pl4_A_DG1_DG2AAAAA00810.19AA00
022pl4_A_DG2_DT3AAAAA00710.19AA00
032pl4_A_DT3_DA4AAAAA00740.23AA00
042pl4_A_DA4_DT5AAAAA00870.13AA00
052pl4_A_DT5_DA6AAAAA00840.14AA00
062pl4_A_DA6_DC7AAAAA00730.27AA00
072pl4_A_DC7_DC8AAAAA00780.28AA00
082pl4_B_DG1_DG2AAAAA08640.23AA08
092pl4_B_DG2_DT3AAAAA00740.19AA00
102pl4_B_DT3_DA4AAwAA10400.29AA10
112pl4_B_DA4_DT5AAAAA00810.16AA00
122pl4_B_DT5_DA6AAAAA00750.19AA00
132pl4_B_DA6_DC7AAAAA00890.19AA00
142pl4_B_DC7_DC8AAAAA04860.25AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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