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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA Polymerase lambda in complex with DNA and dCTP

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pfp_T_DC1_DG2BBBBB00740.40BB00
022pfp_T_DG2_DG3BB2BB07870.21BB07
032pfp_T_DG3_DC4B-ABA01600.28BA01
042pfp_T_DC4_DG5NANNANT01.20OP21
052pfp_T_DG5_DG6BBBBB00800.22BB00
062pfp_T_DG6_DT7B-ABA10770.32BA10
072pfp_T_DT7_DA8A-BAB05200.26AB05
082pfp_T_DA8_DC9BBwBB03610.36BB03
092pfp_T_DC9_DT10BBBBB00570.34BB00
102pfp_T_DT10_DG11BBBBB00740.36BB00
112pfp_P_DC1_DA2A-BAB01590.25AB01
122pfp_P_DA2_DG3B-ABA05840.23BA05
132pfp_P_DG3_DT4B-ABA05780.15BA05
142pfp_P_DT4_DA5B-ABA05640.29BA05
152pfp_P_DA5_DC6NANNANT00.44AA02
162pfp_D_DG1_DC2A-BAB05680.23AB05
172pfp_D_DC2_DC3BBBBB00890.22BB00
182pfp_D_DC3_DG4BB2BB07590.33BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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