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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMP

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012ozs_T_DC1_DG2NANNANT01.94OP19
022ozs_T_DG2_DT3NANNANT01.06OP17
032ozs_T_DT3_DC4AAAAA00900.15AA00
042ozs_T_DC4_DT5A-BAB05590.34AB05
052ozs_T_DT5_DT6miBBB15620.31BB15
062ozs_T_DT6_DA7B-ABA05850.19BA05
072ozs_T_DA7_DT8BBBBB01320.46BB01
082ozs_T_DT8_DG9BBBBB00640.23BB00
092ozs_T_DG9_DA10BBBBB00600.39BB00
102ozs_T_DA10_DC11BBwBB0290.27BB02
112ozs_T_DC11_DA12BBBBB00690.34BB00
122ozs_T_DA12_DG13BBBBB00480.20BB00
132ozs_T_DG13_DC14NANNANT00.33BB10
142ozs_T_DC14_DC15miBBB15370.30BB15
152ozs_T_DC15_DG16B12BB04860.22BB04
162ozs_T_DG16_DC17BBBBB00530.30BB00
172ozs_T_DC17_DG18NANNANT01.01OP17
182ozs_P_DG101_DC102NANNANT00.49BB13
192ozs_P_DC102_DG103NANNANT00.65BB17
202ozs_P_DG103_DG104BBwBB17470.33BB17
212ozs_P_DG104_DC105BBBBB01570.15BB01
222ozs_P_DC105_DT106BBBBB00770.24BB00
232ozs_P_DT106_DG107BBBBB01550.29BB01
242ozs_P_DG107_DT108BBBBB00680.27BB00
252ozs_P_DT108_DC109BBBBB01660.17BB01
262ozs_P_DC109_DA110BBBBB01700.20BB01
272ozs_P_DA110_DT111BBBBB01740.22BB01
282ozs_P_DT111_DA112B-ABA10550.49BA10
292ozs_P_DA112_DA113A-BAB04650.24AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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