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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

human MutSalpha (MSH2/MSH6) bound to ADP and an O6-methyl-guanine T mispair

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012o8c_E_DG1_DA2BBwBB11560.44BB11
022o8c_E_DA2_DA3miBBB10600.28BB10
032o8c_E_DA3_DC4NANNANT00.43BA08
042o8c_E_DC4_DC5NANNANT00.53BB08
052o8c_E_DC5_DG6NANNANT00.56BB17
062o8c_E_DG6_DC7B-ABA08580.26BA08
072o8c_E_DC7_6OG8NANNANT00.51IC06
082o8c_E_6OG8_DC9B-ABA13790.30BA13
092o8c_E_DC9_DG10A-BAB01480.23AB01
102o8c_E_DG10_DC11B-ABA05650.19BA05
112o8c_E_DC11_DT12BBBBB01180.36BB01
122o8c_E_DT12_DA13BBBBB00550.30BB00
132o8c_E_DA13_DG14NANNANT00.48BB03
142o8c_E_DG14_DG15B-ABA10480.48BA10
152o8c_F_DC16_DC17AAAAA08340.29AA08
162o8c_F_DC17_DT18NANNANT00.42AB03
172o8c_F_DT18_DA19B12BB04250.39BB04
182o8c_F_DA19_DG20BBBBB00780.21BB00
192o8c_F_DG20_DC21B-ABA13120.40BA13
202o8c_F_DC21_DG22A-BAB02140.57AB02
212o8c_F_DG22_DT23NANNANT00.74BB08
222o8c_F_DT23_DG24NANNANT00.49IC06
232o8c_F_DG24_DC25miBBB10470.34BB10
242o8c_F_DC25_DG26B12BB04420.20BB04
252o8c_F_DG26_DG27B-ABA01190.26BA01
262o8c_F_DG27_DT28A-BAB01150.40AB01
272o8c_F_DT28_DT29B-ABA13310.33BA13
282o8c_F_DT29_DC30NANNANT00.63AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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