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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure of the Prokaryotic Ribosomal Decoding Site Complexed with Paromamine Derivative NB30

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012o3x_A_G3_C4AAAAA00930.18AA00
022o3x_A_C4_G5AAAAA00860.19AA00
032o3x_A_G5_U6NANNANT01.46IC07
042o3x_A_U6_C7NANNANT01.63OP01
052o3x_A_C7_A8AAAAA00820.28AA00
062o3x_A_A8_C9AAAAA00800.20AA00
072o3x_A_C9_A10AAAAA00850.14AA00
082o3x_A_A10_C11AAAAA00620.28AA00
092o3x_A_C11_C12AAAAA00750.24AA00
102o3x_A_C12_G13AAAAA00870.21AA00
112o3x_A_G13_G14AAAAA00650.19AA00
122o3x_A_G14_U15AAAAA00510.23AA00
132o3x_A_U15_G16AAAAA00490.31AA00
142o3x_A_G16_A17NANNANT01.22OP29
152o3x_A_A17_A18NANNANT01.49ZZS1
162o3x_A_A18_G19NANNANT00.87OP30
172o3x_A_G19_U20AAAAA0060.54AA00
182o3x_A_U20_C21AAAAA08710.22AA08
192o3x_A_C21_G22AAAAA00260.35AA00
202o3x_A_G22_C23AAAAA00740.19AA00
212o3x_B_G26_C27AAAAA00840.21AA00
222o3x_B_C27_G28AAAAA00880.14AA00
232o3x_B_G28_U29AAAAA00120.40AA00
242o3x_B_U29_C30AAwAA06790.23AA06
252o3x_B_C30_A31AAAAA08900.19AA08
262o3x_B_A31_C32AAAAA00890.17AA00
272o3x_B_C32_A33AAAAA04270.40AA04
282o3x_B_A33_C34AAAAA00580.25AA00
292o3x_B_C34_C35AAAAA00870.19AA00
302o3x_B_C35_G36AAAAA08790.16AA08
312o3x_B_G36_G37AAAAA00900.23AA00
322o3x_B_G37_U38AAAAA00860.19AA00
332o3x_B_U38_G39AAAAA00470.25AA00
342o3x_B_G39_A40NANNANT01.94OP17
352o3x_B_A40_A41AAAAA09600.26AA09
362o3x_B_A41_G42NANNANT00.74OP11
372o3x_B_G42_U43AAAAA00390.32AA00
382o3x_B_U43_C44AAAAA00840.16AA00
392o3x_B_C44_G45AAAAA00850.19AA00
402o3x_B_G45_C46AAAAA00180.41AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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