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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.5-Angstrom Resolution

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012nuf_C_C1_A2AAwAA01950.17AA01
022nuf_C_A2_A3AAAAA00700.20AA00
032nuf_C_A3_G4AAAAA08820.21AA08
042nuf_C_G4_G5AAAAA00910.10AA00
052nuf_C_G5_U6AAAAA00830.23AA00
062nuf_C_U6_C7AAAAA00680.25AA00
072nuf_C_C7_A8AAAAA00820.14AA00
082nuf_C_A8_U9AAAAA00920.20AA00
092nuf_C_U9_U10AAAAA00880.17AA00
102nuf_C_U10_C11AAAAA00850.24AA00
112nuf_C_C11_G12AAAAA00780.25AA00
122nuf_C_G12_C13NANNANT01.51OP29
132nuf_C_C13_A14AAAAA08650.42AA08
142nuf_C_A14_A15AAAAA00590.27AA00
152nuf_C_A15_G16AAAAA08410.62AA08
162nuf_C_G16_A17AAAAA00870.17AA00
172nuf_C_A17_G18AAAAA00670.20AA00
182nuf_C_G18_U19AAAAA00860.21AA00
192nuf_C_U19_G20AAAAA00910.11AA00
202nuf_C_G20_G21AAAAA00790.20AA00
212nuf_C_G21_C22AAAAA00890.20AA00
222nuf_C_C22_C23AAAAA00640.21AA00
232nuf_C_C23_U24AAAAA00830.21AA00
242nuf_C_U24_U25AAAAA00570.26AA00
252nuf_C_U25_G26AAAAA00910.14AA00
262nuf_C_G26_C27AAAAA00960.11AA00
272nuf_C_C27_G28AAAAA00980.10AA00
282nuf_D_C1_A2AAwAA01940.18AA01
292nuf_D_A2_A3AAAAA00750.21AA00
302nuf_D_A3_G4AAAAA00790.12AA00
312nuf_D_G4_G5AAAAA00930.11AA00
322nuf_D_G5_U6AAAAA00830.23AA00
332nuf_D_U6_C7AAAAA00670.25AA00
342nuf_D_C7_A8AAAAA00750.15AA00
352nuf_D_A8_U9AAAAA00880.21AA00
362nuf_D_U9_U10AAAAA00880.19AA00
372nuf_D_U10_C11AAAAA00830.21AA00
382nuf_D_C11_G12AAAAA00900.24AA00
392nuf_D_G12_C13OPNOP03740.13OP03
402nuf_D_C13_A14AAAAA08780.38AA08
412nuf_D_A14_A15AAAAA00730.23AA00
422nuf_D_A15_G16AAAAA08360.63AA08
432nuf_D_G16_A17AAAAA00870.14AA00
442nuf_D_A17_G18AAAAA00710.20AA00
452nuf_D_G18_U19AAAAA00780.26AA00
462nuf_D_U19_G20AAAAA00890.12AA00
472nuf_D_G20_G21AAAAA00790.21AA00
482nuf_D_G21_C22AAAAA00920.17AA00
492nuf_D_C22_C23AAAAA00560.24AA00
502nuf_D_C23_U24AAAAA00860.23AA00
512nuf_D_U24_U25AAAAA00800.22AA00
522nuf_D_U25_G26AAAAA00850.14AA00
532nuf_D_G26_C27AAAAA00960.11AA00
542nuf_D_C27_G28AAAAA00950.12AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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