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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA

Results of the assignment of 53 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012nre_F_A5_G6AAwAA06170.43AA06
022nre_F_G6_G7NANNANT00.51AA03
032nre_F_G7_U8NANNANT01.53OP31
042nre_F_U8_G9NANNANT01.20IC07
052nre_F_G9_G10NANNANT01.30OP04
062nre_F_G10_U11NANNANT00.64AA04
072nre_F_U11_G12AAAAA00350.24AA00
082nre_F_G12_G13NANNANT00.83AA04
092nre_F_G13_A14NANNANT00.82OP08
102nre_F_A14_A15NANNANT00.62AA10
112nre_F_A15_U16NANNANT00.83OP06
122nre_F_U16_U17NANNANT01.46OP17
132nre_F_U17_G18NANNANT01.61OP17
142nre_F_G18_G19NANNANT00.64IC06
152nre_F_G19_U20NANNANT01.59OP13
162nre_F_A20.A_G21AAAAA04690.31AA04
172nre_F_U20_A20.ANANNANT00.69OP05
182nre_F_G21_A22NANNANT00.78OP02
192nre_F_A22_C23AAwAA05210.58AA05
202nre_F_C23_A24NANNANT00.68AA10
212nre_F_A24_C25NANNANT01.08BA09
222nre_F_C25_G26NANNANT00.61AA06
232nre_F_G26_C27AAwAA11880.19AA11
242nre_F_C27_U28NANNANT00.87AA12
252nre_F_U28_A29AAwAA06560.48AA06
262nre_F_A29_C30AAAAA08670.48AA08
272nre_F_C30_C31NANNANT00.97AA04
282nre_F_G39_G40NANNANT00.47AA11
292nre_F_G40_U41AAAAA08150.44AA08
302nre_F_U41_A42AAwAA06330.32AA06
312nre_F_A42_G43NANNANT00.43AA08
322nre_F_G43_U44NANNANT00.44AB04
332nre_F_U48_A49NANNANT01.51OP06
342nre_F_A49_C50AAAAA08460.26AA08
352nre_F_C50_G51AAAAA00400.28AA00
362nre_F_G51_G52AAwAA06330.31AA06
372nre_F_G52_G53AAAAA00680.27AA00
382nre_F_G53_U54AAAAA00380.16AA00
392nre_F_U54_U55AAAAA00470.40AA00
402nre_F_U55_C56OPNOP04100.36OP04
412nre_F_C56_A57AAAAA00150.51AA00
422nre_F_A57_A58NANNANT00.75AA03
432nre_F_A58_G59NANNANT01.40OP05
442nre_F_G59_U60NANNANT00.69AA04
452nre_F_U60_C61NANNANT00.41OP12
462nre_F_C61_C62AAwAA10120.56AA10
472nre_F_C62_C63AAAAA03660.30AA03
482nre_F_C63_G64AAwAA06840.32AA06
492nre_F_G64_U65AAAAA08330.47AA08
502nre_F_U65_C66AAAAA03200.35AA03
512nre_F_C66_C67NANNANT00.37AA10
522nre_F_C67_U68AAAAA00140.54AA00
532nre_F_U68_C69NANNANT01.02AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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