Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ldz_A_G1_C2 | AAu | AA12 | 36 | 0.35 |
| 02 | 2ldz_A_C2_G3 | AAw | AA06 | 62 | 0.23 |
| 03 | 2ldz_A_G3_A4 | AAA | AA00 | 34 | 0.28 |
| 04 | 2ldz_A_A4_C5 | AAw | AA01 | 31 | 0.28 |
| 05 | 2ldz_A_C5_C6 | AAw | AA06 | 46 | 0.57 |
| 06 | 2ldz_A_C6_G7 | SYN | AB2S | 54 | 0.28 |
| 07 | 2ldz_A_G7_A8 | NAN | NANT | 0 | 1.47 |
| 08 | 2ldz_A_A8_G9 | NAN | NANT | 0 | 1.14 |
| 09 | 2ldz_A_G9_C10 | NAN | NANT | 0 | 0.62 |
| 10 | 2ldz_A_C10_C11 | NAN | NANT | 0 | 0.64 |
| 11 | 2ldz_A_C11_A12 | AAA | AA00 | 59 | 0.26 |
| 12 | 2ldz_A_A12_G13 | AAw | AA01 | 25 | 0.35 |
| 13 | 2ldz_A_G13_C14 | AAA | AA00 | 64 | 0.26 |
| 14 | 2ldz_A_C14_G15 | AAw | AA01 | 17 | 0.60 |
| 15 | 2ldz_A_G15_A16 | NAN | NANT | 0 | 0.24 |
| 16 | 2ldz_A_A16_A17 | AAA | AA00 | 9 | 0.46 |
| 17 | 2ldz_A_A17_A18 | NAN | NANT | 0 | 0.65 |
| 18 | 2ldz_A_A18_G19 | AAw | AA05 | 64 | 0.20 |
| 19 | 2ldz_A_G19_U20 | AAA | AA00 | 43 | 0.47 |
| 20 | 2ldz_A_U20_U21 | AAw | AA01 | 20 | 0.57 |
| 21 | 2ldz_A_U21_G22 | AAA | AA08 | 55 | 0.15 |
| 22 | 2ldz_A_G22_G23 | AAw | AA01 | 12 | 0.22 |
| 23 | 2ldz_A_G23_G24 | AAA | AA08 | 15 | 0.60 |
| 24 | 2ldz_A_G24_A25 | AAw | AA11 | 21 | 0.48 |
| 25 | 2ldz_A_A25_G26 | AAA | AA04 | 41 | 0.46 |
| 26 | 2ldz_A_G26_U27 | AAw | AA01 | 20 | 0.35 |
| 27 | 2ldz_A_U27_C28 | AAA | AA04 | 23 | 0.59 |
| 28 | 2ldz_A_C28_G29 | NAN | NANT | 0 | 0.37 |
| 29 | 2ldz_A_G29_C30 | AAw | AA01 | 60 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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