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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA / RNA Hybrid containing a central stereo specific Sp borano phosphate linkage

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012lb4_A_DA1_DT2BBwBB16270.61BB16
022lb4_A_DT2_DG3NANNANT00.61BB07
032lb4_A_DG3_DG4NANNANT00.52AA00
042lb4_A_DG4_DT5AAAAA04720.34AA04
052lb4_A_DC7_DT8A-BAB01140.34AB01
062lb4_A_DT8_DC9B-ABA05110.25BA05
072lb4_B_G10_A11AAAAA00470.26AA00
082lb4_B_A11_G12AAAAA00620.21AA00
092lb4_B_G12_C13AAAAA00720.20AA00
102lb4_B_C13_A14AAAAA00860.17AA00
112lb4_B_A14_C15AAAAA08740.24AA08
122lb4_B_C15_C16AAAAA00810.19AA00
132lb4_B_C16_A17AAAAA00670.33AA00
142lb4_B_A17_U18AAAAA00550.24AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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