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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

r(CCGCUGCGG)2 UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with two hydrogen bond pairs

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012l8w_A_C1_C2AAAAA00510.39AA00
022l8w_A_C2_G3AAwAA01370.36AA01
032l8w_A_G3_C4AAAAA08580.27AA08
042l8w_A_C4_U5AAAAA00660.29AA00
052l8w_A_U5_G6AAuAA12750.18AA12
062l8w_A_G6_C7AAAAA00380.31AA00
072l8w_A_C7_G8AAAAA00540.26AA00
082l8w_A_G8_G9AAAAA04660.43AA04
092l8w_B_C10_C11AAAAA04480.44AA04
102l8w_B_C11_G12AAwAA01420.25AA01
112l8w_B_G12_C13AAAAA00690.23AA00
122l8w_B_C13_U14NANNANT00.62AA01
132l8w_B_U14_G15AAAAA00530.28AA00
142l8w_B_G15_C16AAAAA04710.24AA04
152l8w_B_C16_G17AAwAA01610.29AA01
162l8w_B_G17_G18AAAAA00530.36AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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