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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2-RNA HAIRPIN (4ONE -5) COMPLEX

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012iz9_R_A3_U4AAAAA04430.50AA04
022iz9_R_U4_G5AAAAA00760.19AA00
032iz9_R_G5_A6NANNANT00.70OP30
042iz9_R_A6_G7NANNANT00.79OP31
052iz9_R_G7_G8AAAAA00360.31AA00
062iz9_R_G8_A9AAAAA00660.26AA00
072iz9_R_A9_U10A-BAB05660.32AB05
082iz9_R_U10_ONE11NANNANT01.60OP17
092iz9_R_ONE11_A12NANNANT00.87OP13
102iz9_R_A12_C13NANNANT00.61OP27
112iz9_R_C13_C14NANNANT00.30AA10
122iz9_R_C14_C15AAAAA00250.52AA00
132iz9_R_C15_A16AAAAA00900.14AA00
142iz9_R_A16_U17AAAAA00740.17AA00
152iz9_S_A3_U4AAuAA12420.45AA12
162iz9_S_U4_G5AAAAA00780.20AA00
172iz9_S_G5_A6NANNANT00.98OP29
182iz9_S_A6_G7NANNANT00.76OP31
192iz9_S_G7_G8AAAAA00170.38AA00
202iz9_S_G8_A9AAAAA00640.29AA00
212iz9_S_A9_U10A-BAB05510.33AB05
222iz9_S_U10_ONE11NANNANT01.64OP17
232iz9_S_ONE11_A12NANNANT02.29OPS1
242iz9_S_A12_C13NANNANT00.64OP27
252iz9_S_C13_C14AAwAA10460.32AA10
262iz9_S_C14_C15AAAAA00120.53AA00
272iz9_S_C15_A16AAAAA00860.15AA00
282iz9_S_A16_U17AAAAA08630.35AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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