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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2-RNA HAIRPIN (C-7) COMPLEX

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012iz8_R_A3_U4AAAAA00780.20AA00
022iz8_R_U4_G5AAAAA00750.18AA00
032iz8_R_G5_A6NANNANT00.97OP29
042iz8_R_A6_G7NANNANT00.80OP31
052iz8_R_G7_G8AAAAA00510.24AA00
062iz8_R_G8_C9AAAAA00580.29AA00
072iz8_R_C9_U10OPNOP09650.35OP09
082iz8_R_U10_C11NANNANT00.35OP20
092iz8_R_C11_A12NANNANT01.41OP22
102iz8_R_A12_C13NANNANT00.59OP27
112iz8_R_C13_C14AAAAA00590.20AA00
122iz8_R_C14_C15AAAAA00890.26AA00
132iz8_R_C15_A16AAAAA00970.10AA00
142iz8_R_A16_U17AAAAA00590.23AA00
152iz8_R_U17_G18NANNANT00.33AA03
162iz8_S_U4_G5AAAAA00590.19AA00
172iz8_S_G5_A6NANNANT00.92OP29
182iz8_S_A6_G7NANNANT00.81OP31
192iz8_S_G7_G8AAAAA00110.40AA00
202iz8_S_G8_C9AAAAA00300.29AA00
212iz8_S_C9_U10OPNOP09670.32OP09
222iz8_S_U10_C11NANNANT00.37OP20
232iz8_S_C11_A12NANNANT01.50OP22
242iz8_S_A12_C13NANNANT00.53OP27
252iz8_S_C13_C14AAAAA00920.15AA00
262iz8_S_C14_C15AAAAA00870.25AA00
272iz8_S_C15_A16NANNANT00.46AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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