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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

60kDa Ro autoantigen in complex with a fragment of misfolded RNA

Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012i91_C_G1_C2AAAAA00350.34AA00
022i91_C_C2_C3AAAAA00580.30AA00
032i91_C_C3_U4AAwAA01170.29AA01
042i91_C_U4_A5AAAAA08850.25AA08
052i91_C_A5_C6AAAAA08870.13AA08
062i91_C_C6_C7AAAAA00880.15AA00
072i91_C_C7_C8AAAAA00580.37AA00
082i91_D_G2_G3AAAAA00320.29AA00
092i91_D_G3_U4AAAAA00870.25AA00
102i91_D_U4_A5AAAAA00360.18AA00
112i91_D_A5_G6AAwAA01520.39AA01
122i91_D_G6_G7AAAAA08900.18AA08
132i91_D_G7_C8AAAAA00440.27AA00
142i91_D_C8_U9NANNANT01.41OP30
152i91_D_U9_U10NANNANT01.75OP16
162i91_D_U10_U11NANNANT01.37BB14
172i91_D_U11_U12NANNANT00.70OP15
182i91_D_U12_C13NANNANT01.57OP31
192i91_D_C13_A14NANNANT01.43OP17
202i91_D_A14_A15NANNANT01.43AA03
212i91_E_G1_C2AAAAA00130.34AA00
222i91_E_C2_C3AAAAA00740.28AA00
232i91_E_C3_U4AAAAA00780.15AA00
242i91_E_U4_A5AAAAA00890.15AA00
252i91_E_A5_C6AAAAA00950.13AA00
262i91_E_C6_C7AAAAA00900.13AA00
272i91_E_C7_C8NANNANT02.30AA13
282i91_F_C1_G2AAAAA04490.40AA04
292i91_F_G2_G3AAAAA08670.25AA08
302i91_F_G3_U4AAAAA00290.30AA00
312i91_F_U4_A5AAAAA00840.21AA00
322i91_F_A5_G6AAAAA00840.18AA00
332i91_F_G6_G7AAAAA00720.32AA00
342i91_F_G7_C8AAAAA00740.26AA00
352i91_F_C8_U9NANNANT01.35OP30
362i91_F_U9_U10NANNANT00.88OP30
372i91_F_U10_U11NANNANT01.28BB08
382i91_F_U11_U12NANNANT00.73OP15
392i91_F_U12_C13NANNANT01.86OP16
402i91_F_C13_A14NANNANT00.95OP17
412i91_F_A14_A15NANNANT02.06ZZ1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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