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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

ddCTP:G pair in the polymerase active site (0 position)

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012hvi_B_DC21_DC22A-BAB01720.22AB01
022hvi_B_DC22_DT23BBwBB02880.15BB02
032hvi_B_DT23_DG24BBBBB00710.34BB00
042hvi_B_DG24_DA25B-ABA08870.17BA08
052hvi_B_DA25_DC26AAAAA00810.23AA00
062hvi_B_DC26_DT27AAAAA00710.25AA00
072hvi_B_DT27_DC28AAAAA00830.21AA00
082hvi_C_DA1_DT2BBwBB03250.35BB03
092hvi_C_DT2_DG3NANNANT01.50OP16
102hvi_C_DG3_DC4AAAAA00480.28AA00
112hvi_C_DC4_DG5AAAAA00770.25AA00
122hvi_C_DG5_DA6AAwAA01920.13AA01
132hvi_C_DA6_DG7A-BAB04870.14AB04
142hvi_C_DG7_DT8BBBBB00900.20BB00
152hvi_C_DT8_DC9B-ABA01950.14BA01
162hvi_C_DC9_DA10A-BAB01890.10AB01
172hvi_C_DA10_DG11BBBBB00950.11BB00
182hvi_C_DG11_DG12B-ABA01450.26BA01
192hvi_E_DC21_DC22A-BAB05710.21AB05
202hvi_E_DC22_DT23BBBBB00920.15BB00
212hvi_E_DT23_DG24BBBBB00870.19BB00
222hvi_E_DG24_DA25B-ABA08860.18BA08
232hvi_E_DA25_DC26AAAAA00800.25AA00
242hvi_E_DC26_DT27AAAAA00540.29AA00
252hvi_E_DT27_DC28AAAAA00830.20AA00
262hvi_F_DA1_DT2BBBBB00850.29BB00
272hvi_F_DT2_DG3NANNANT01.46OP31
282hvi_F_DG3_DC4AAAAA00500.29AA00
292hvi_F_DC4_DG5AAAAA00750.29AA00
302hvi_F_DG5_DA6AAwAA01930.14AA01
312hvi_F_DA6_DG7A-BAB04870.14AB04
322hvi_F_DG7_DT8BBBBB00920.18BB00
332hvi_F_DT8_DC9B-ABA01830.15BA01
342hvi_F_DC9_DA10A-BAB01890.09AB01
352hvi_F_DA10_DG11BBBBB00930.12BB00
362hvi_F_DG11_DG12BBBBB00960.13BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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