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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of Bacillus caldolyticus cold shock protein in complex with hexathymidine

Results of the assignment of 11 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012hax_C_DT1_DT2NANNANT00.55IC01
022hax_C_DT2_DT3OPNOP22770.26OP22
032hax_C_DT3_DT4NANNANT00.95OP22
042hax_C_DT4_DT5OPNOP22400.55OP22
052hax_C_DT5_DT6NANNANT00.55OP25
062hax_D_DT1_DT2NANNANT00.64AB04
072hax_D_DT2_DT3OPNOP22820.36OP22
082hax_D_DT3_DT4NANNANT00.86OP22
092hax_D_DT4_DT5OPNOP22650.50OP22
102hax_D_DT5_DT.A6NANNANT00.53OP25
112hax_D_DT5_DT.B6NANNANT00.49OP25

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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