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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012han_C_DC1_DA2A-BAB05120.31AB05
022han_C_DA2_DA3BBwBB02430.35BB02
032han_C_DA3_DG4BBBBB00410.35BB00
042han_C_DG4_DG5B-ABA13710.23BA13
052han_C_DG5_DG6AAAAA00730.30AA00
062han_C_DG6_DT7A-BAB04470.41AB04
072han_C_DT7_DT8BBBBB00520.22BB00
082han_C_DT8_DC9BBBBB00600.42BB00
092han_C_DC9_DA10BB2BB07880.35BB07
102han_C_DA10_DA11BBBBB00510.23BB00
112han_C_DA11_DT12B-ABA05940.27BA05
122han_C_DT12_DG13A-BAB01270.38AB01
132han_C_DG13_DC14B12BB04690.22BB04
142han_C_DC14_DA15BBBBB00850.14BB00
152han_C_DA15_DC16B-ABA01290.25BA01
162han_C_DC16_DT17A-BAB01830.27AB01
172han_C_DT17_DT18BBBBB00820.15BB00
182han_C_DT18_DG19BBBBB00910.13BB00
192han_C_DG19_DT20BBBBB01550.27BB01
202han_D_DG1_DA2SYNBBS1820.17BBS1
212han_D_DA2_DC3B-ABA05620.36BA05
222han_D_DC3_DA4A-BAB01210.30AB01
232han_D_DA4_DA5B12BB04540.18BB04
242han_D_DA5_DG6BBBBB01690.18BB01
252han_D_DG6_DT7BBBBB00570.35BB00
262han_D_DT7_DG8BBBBB00820.22BB00
272han_D_DG8_DC9BBBBB00820.21BB00
282han_D_DC9_DA10BB2BB07970.22BB07
292han_D_DA10_DT11BBBBB00830.18BB00
302han_D_DT11_DT12BBBBB01940.15BB01
312han_D_DT12_DG13BBBBB00580.34BB00
322han_D_DG13_DA14BB2BB07920.25BB07
332han_D_DA14_DA15BBBBB00770.18BB00
342han_D_DA15_DC16B-ABA13800.24BA13
352han_D_DC16_DC17A-BAB05170.26AB05
362han_D_DC17_DC18BBBBB00810.25BB00
372han_D_DC18_DT19BBBBB00360.26BB00
382han_D_DT19_DT20BBBBB00560.30BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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