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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Asite RNA + designer antibiotic

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012f4u_A_G1403_C1404AAwAA01460.29AA01
022f4u_A_C1404_G1405AAAAA08490.28AA08
032f4u_A_G1405_U1406NANNANT01.99OP17
042f4u_A_U1406_C1407NANNANT01.40OPS1
052f4u_A_C1407_A1408AAAAA00940.21AA00
062f4u_A_A1408_C1409AAAAA00770.24AA00
072f4u_A_C1409_A1410AAAAA08790.20AA08
082f4u_A_A1410_C1411AAAAA00720.32AA00
092f4u_A_C1411_C1412AAAAA04830.31AA04
102f4u_A_C1412_G1488AAAAA00900.21AA00
112f4u_A_G1488_G1489AAAAA00800.21AA00
122f4u_A_G1489_U1490AAAAA00790.16AA00
132f4u_A_U1490_G1491AAAAA08800.27AA08
142f4u_A_G1491_A1492NANNANT01.18OP29
152f4u_A_A1492_A1493NANNANT01.91OP06
162f4u_A_A1493_G1494NANNANT00.32AAS1
172f4u_A_G1494_U1495AAAAA00300.36AA00
182f4u_A_U1495_C1496AAAAA08340.43AA08
192f4u_A_C1496_G1497AAAAA00780.17AA00
202f4u_A_G1497_C1498AAAAA00300.22AA00
212f4u_B_G1403_C1404NANNANT00.53AA04
222f4u_B_C1404_G1405AAAAA00280.39AA00
232f4u_B_G1405_U1406AAwAA01610.21AA01
242f4u_B_U1406_C1407AAwAA11750.19AA11
252f4u_B_C1407_A1408AAAAA08430.37AA08
262f4u_B_A1408_C1409AAAAA08160.32AA08
272f4u_B_C1409_A1410AAAAA00890.20AA00
282f4u_B_A1410_C1411AAAAA00490.24AA00
292f4u_B_C1411_C1412AAAAA00790.15AA00
302f4u_B_C1412_G1488AAAAA00790.27AA00
312f4u_B_G1488_G1489AAwAA10620.18AA10
322f4u_B_G1489_U1490AAAAA00640.22AA00
332f4u_B_U1490_G1491AAAAA08660.25AA08
342f4u_B_G1491_A1492NANNANT01.41OP29
352f4u_B_A1492_A1493AAAAA09220.27AA09
362f4u_B_A1493_G1494NANNANT00.87OP11
372f4u_B_G1494_U1495AAAAA00510.25AA00
382f4u_B_U1495_C1496AAwAA06700.22AA06
392f4u_B_C1496_G1497AAAAA08760.27AA08
402f4u_B_G1497_C1498AAAAA08460.20AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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