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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Complex structure of CCA-adding enzyme with tRNAminiDC

Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012dr7_B_G1_G2AAAAA00750.10AA00
022dr7_B_G2_C3AAAAA00900.09AA00
032dr7_B_C3_C4AAAAA00670.23AA00
042dr7_B_C4_C5AAAAA00840.26AA00
052dr7_B_C5_G6AAAAA00750.30AA00
062dr7_B_G6_G7AAwAA01750.28AA01
072dr7_B_G7_G8AAAAA00170.40AA00
082dr7_B_G8_G9AAwAA06630.36AA06
092dr7_B_G9_C10NANNANT00.65AA10
102dr7_B_C10_G11AAAAA08610.20AA08
112dr7_B_G11_G12AAAAA00780.12AA00
122dr7_B_G12_U13AAAAA00820.23AA00
132dr7_B_U13_U14AAAAA00880.23AA00
142dr7_B_U14_C15NANNANT00.41OP04
152dr7_B_C15_G16SYNAAS1630.18AAS1
162dr7_B_G16_A17NANNANT00.45IC01
172dr7_B_A17_U18NANNANT01.17OP18
182dr7_B_U18_U19AAAAA08160.56AA08
192dr7_B_U19_C20NANNANT01.43IC04
202dr7_B_C20_C21AAAAA08560.36AA08
212dr7_B_C21_G22AAwAA01940.17AA01
222dr7_B_G22_C23AAAAA00710.20AA00
232dr7_B_C23_C24AAwAA01690.33AA01
242dr7_B_C24_C25AAwAA11870.32AA11
252dr7_B_C25_U26AAAAA08790.40AA08
262dr7_B_U26_G27AAuAA12700.31AA12
272dr7_B_G27_G28AAAAA00720.12AA00
282dr7_B_G28_G29AAAAA00820.12AA00
292dr7_B_G29_C30AAAAA00590.21AA00
302dr7_B_C30_C31AAAAA00770.21AA00
312dr7_B_C31_A32AAAAA00310.23AA00
322dr7_B_A32_C33NANNANT00.58ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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