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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012cgp_B_DG503_DT504BBwBB16510.66BB16
022cgp_B_DT504_DC505miBBB15890.20BB15
032cgp_B_DC505_DA506BBBBB00510.28BB00
042cgp_B_DA506_DC507NANNANT00.57BB02
052cgp_B_DC507_DA508BBBBB00630.28BB00
062cgp_B_DA508_DT509BBwBB02780.23BB02
072cgp_B_DT509_DT510NANNANT00.43BB02
082cgp_B_DT510_DA511NANNANT00.28BB03
092cgp_B_DA511_DA512BBBBB00290.40BB00
102cgp_B_DA512_DT513BBBBB00540.42BB00
112cgp_C_DA534_DT535NANNANT00.61BB02
122cgp_C_DT535_DT536BBBBB00670.24BB00
132cgp_C_DT536_DA537BBBBB00640.27BB00
142cgp_C_DA537_DA538BBwBB02680.29BB02
152cgp_C_DA538_DT539BBwBB02680.25BB02
162cgp_C_DT539_DG540BBBBB00640.24BB00
172cgp_C_DG540_DT541BBwBB02230.28BB02
182cgp_C_DT541_DG542BBBBB00490.36BB00
192cgp_C_DG542_DA543BBBBB00290.36BB00
202cgp_C_DA543_DC544BBwBB02450.30BB02
212cgp_C_DC544_DA545BBBBB00280.48BB00
222cgp_C_DA545_DT546NANNANT00.39BB02
232cgp_C_DT546_DA547BBBBB00450.35BB00
242cgp_C_DA547_DT548BBBBB00470.26BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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