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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Refinement of RNase P P4 stemloop structure using residual dipolar coupling data, C70U mutant cobalt(III) hexammine complex

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012cd6_A_G1_G2NANNANT00.47AA02
022cd6_A_G2_A3AAAAA00360.20AA00
032cd6_A_A3_A4AAAAA00340.34AA00
042cd6_A_A4_G5AAAAA00430.43AA00
052cd6_A_G5_U6AAAAA00110.52AA00
062cd6_A_U6_U7NANNANT01.54AA11
072cd6_A_U7_C8NANNANT00.88OP15
082cd6_A_C8_G9AAAAA04560.35AA04
092cd6_A_G9_G10AAAAA08310.23AA08
102cd6_A_G10_U11AAAAA04810.30AA04
112cd6_A_U11_C12AAAAA08480.35AA08
122cd6_A_C12_U13AAAAA04510.51AA04
132cd6_A_U13_U14NANNANT00.53OP09
142cd6_A_U14_C15NANNANT01.00OP12
152cd6_A_C15_G16NANNANT01.98OP23
162cd6_A_G16_G17NANNANT00.64AAS1
172cd6_A_G17_A18AAAAA00310.33AA00
182cd6_A_A18_C19AAAAA04760.19AA04
192cd6_A_C19_C20AAAAA08160.38AA08
202cd6_A_C20_G21AAAAA00540.21AA00
212cd6_A_G21_G22AAAAA08190.55AA08
222cd6_A_G22_C23AAAAA08500.17AA08
232cd6_A_C23_U24AAAAA08470.35AA08
242cd6_A_U24_U25AAAAA00320.31AA00
252cd6_A_U25_C26AAAAA00690.27AA00
262cd6_A_C26_C27AAwAA01550.38AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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