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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2-RNA HAIRPIN (G -5) COMPLEX

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012c51_R_A3_U4AAAAA00570.31AA00
022c51_R_U4_G5AAAAA00840.16AA00
032c51_R_G5_A6NANNANT00.97OP29
042c51_R_A6_G7NANNANT00.79OP31
052c51_R_G7_G8AAAAA00560.23AA00
062c51_R_G8_A9AAAAA00850.19AA00
072c51_R_A9_U10NANNANT00.46OP09
082c51_R_U10_G11NANNANT01.82ZZ02
092c51_R_G11_A12NANNANT02.14OP19
102c51_R_A12_C13NANNANT00.56OP27
112c51_R_C13_C14AAAAA00820.17AA00
122c51_R_C14_C15AAAAA00880.19AA00
132c51_R_C15_A16AAAAA00230.24AA00
142c51_R_A16_U17AAAAA00630.22AA00
152c51_S_U4_G5AAAAA00910.15AA00
162c51_S_G5_A6NANNANT00.95OP29
172c51_S_A6_G7NANNANT00.76OP31
182c51_S_G7_G8AAAAA08160.39AA08
192c51_S_G8_A9AAAAA00530.43AA00
202c51_S_A9_U10NANNANT00.45OP09
212c51_S_U10_G11NANNANT01.34OP31
222c51_S_G11_A12NANNANT00.65OP16
232c51_S_A12_C13NANNANT00.61OP27
242c51_S_C13_C14AAAAA00900.18AA00
252c51_S_C14_C15AAAAA00890.20AA00
262c51_S_C15_A16NANNANT00.49AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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