DNATCO v3.2: results

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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	2c4q_R_C2_A3	NAN	NANT	0	0.77	AB02
02	2c4q_R_A3_U4	AAA	AA00	65	0.20	AA00
03	2c4q_R_U4_G5	AAA	AA00	85	0.15	AA00
04	2c4q_R_G5_A6	NAN	NANT	0	0.94	OP29
05	2c4q_R_A6_G7	NAN	NANT	0	0.78	OP31
06	2c4q_R_G7_G8	AAA	AA00	47	0.26	AA00
07	2c4q_R_G8_A9	AAA	AA00	66	0.23	AA00
08	2c4q_R_A9_U10	OPN	OP09	85	0.23	OP09
09	2c4q_R_U10_PYO11	OPN	OP20	38	0.34	OP20
10	2c4q_R_PYO11_A12	NAN	NANT	0	1.51	OP22
11	2c4q_R_A12_C13	NAN	NANT	0	0.54	OP27
12	2c4q_R_C13_C14	AAA	AA00	96	0.17	AA00
13	2c4q_R_C14_C15	AAA	AA00	88	0.22	AA00
14	2c4q_R_C15_A16	AAA	AA00	98	0.11	AA00
15	2c4q_R_A16_U17	AAA	AA00	91	0.11	AA00
16	2c4q_R_U17_G18	AAA	AA00	90	0.24	AA00
17	2c4q_S_C2_A3	NAN	NANT	0	0.79	AB02
18	2c4q_S_A3_U4	AAA	AA00	80	0.19	AA00
19	2c4q_S_U4_G5	AAA	AA00	84	0.19	AA00
20	2c4q_S_G5_A6	NAN	NANT	0	0.90	OP29
21	2c4q_S_A6_G7	NAN	NANT	0	0.79	OP31
22	2c4q_S_G7_G8	AAA	AA08	63	0.34	AA08
23	2c4q_S_G8_A9	AAA	AA00	77	0.27	AA00
24	2c4q_S_A9_U10	OPN	OP09	47	0.27	OP09
25	2c4q_S_U10_PYO11	NAN	NANT	0	1.57	IC04
26	2c4q_S_PYO11_A12	NAN	NANT	0	1.69	OP22
27	2c4q_S_A12_C13	NAN	NANT	0	0.57	OP27
28	2c4q_S_C13_C14	AAA	AA00	92	0.17	AA00
29	2c4q_S_C14_C15	AAA	AA00	68	0.28	AA00
30	2c4q_S_C15_A16	AAA	AA00	83	0.14	AA00
31	2c4q_S_A16_U17	AAA	AA00	87	0.16	AA00
32	2c4q_S_U17_G18	AAA	AA00	60	0.28	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

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