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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2-RNA HAIRPIN (2ONE -5) COMPLEX

Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012c4q_R_C2_A3NANNANT00.77AB02
022c4q_R_A3_U4AAAAA00650.20AA00
032c4q_R_U4_G5AAAAA00850.15AA00
042c4q_R_G5_A6NANNANT00.94OP29
052c4q_R_A6_G7NANNANT00.78OP31
062c4q_R_G7_G8AAAAA00470.26AA00
072c4q_R_G8_A9AAAAA00660.23AA00
082c4q_R_A9_U10OPNOP09850.23OP09
092c4q_R_U10_PYO11OPNOP20380.34OP20
102c4q_R_PYO11_A12NANNANT01.51OP22
112c4q_R_A12_C13NANNANT00.54OP27
122c4q_R_C13_C14AAAAA00960.17AA00
132c4q_R_C14_C15AAAAA00880.22AA00
142c4q_R_C15_A16AAAAA00980.11AA00
152c4q_R_A16_U17AAAAA00910.11AA00
162c4q_R_U17_G18AAAAA00900.24AA00
172c4q_S_C2_A3NANNANT00.79AB02
182c4q_S_A3_U4AAAAA00800.19AA00
192c4q_S_U4_G5AAAAA00840.19AA00
202c4q_S_G5_A6NANNANT00.90OP29
212c4q_S_A6_G7NANNANT00.79OP31
222c4q_S_G7_G8AAAAA08630.34AA08
232c4q_S_G8_A9AAAAA00770.27AA00
242c4q_S_A9_U10OPNOP09470.27OP09
252c4q_S_U10_PYO11NANNANT01.57IC04
262c4q_S_PYO11_A12NANNANT01.69OP22
272c4q_S_A12_C13NANNANT00.57OP27
282c4q_S_C13_C14AAAAA00920.17AA00
292c4q_S_C14_C15AAAAA00680.28AA00
302c4q_S_C15_A16AAAAA00830.14AA00
312c4q_S_A16_U17AAAAA00870.16AA00
322c4q_S_U17_G18AAAAA00600.28AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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