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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2 (N87AE89K mutant) - Qbeta RNA hairpin complex

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012bs1_R_U6_G7AAAAA00870.23AA00
022bs1_R_G7_U8AAAAA00960.09AA00
032bs1_R_U8_C9AAAAA00880.20AA00
042bs1_R_C9_U10OPNOP09190.64OP09
052bs1_R_U10_A11NANNANT00.66OP20
062bs1_R_A11_A12NANNANT01.33OP22
072bs1_R_A12_G13NANNANT01.92BA16
082bs1_R_G13_A14NANNANT00.34AA10
092bs1_R_A14_C15AAwAA06550.42AA06
102bs1_R_C15_A16AAAAA08290.49AA08
112bs1_R_A16_G17NANNANT00.94IC03
122bs1_S_U6_G7AAwAA01770.15AA01
132bs1_S_G7_U8AAAAA00260.32AA00
142bs1_S_U8_C9AAAAA00710.18AA00
152bs1_S_C9_U10NANNANT00.57OP09
162bs1_S_U10_A11NANNANT01.77IC03
172bs1_S_A11_A12NANNANT01.24OP22
182bs1_S_A12_G13NANNANT00.65OP19
192bs1_S_G13_A14NANNANT00.67AA10
202bs1_S_A14_C15NANNANT00.57AA01
212bs1_S_C15_A16NANNANT00.62AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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