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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2 (N87AE89K mutant) - RNA hairpin complex

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012bq5_R_A1_C2NANNANT00.42AA10
022bq5_R_C2_A3AAAAA00540.44AA00
032bq5_R_A3_U4AAAAA00890.15AA00
042bq5_R_U4_G5AAAAA00830.18AA00
052bq5_R_G5_A6NANNANT01.06OP29
062bq5_R_A6_G7NANNANT00.74OP31
072bq5_R_G7_G8AAAAA00550.25AA00
082bq5_R_G8_A9AAAAA00600.27AA00
092bq5_R_A9_U10NANNANT02.18IC03
102bq5_R_U10_U11NANNANT00.60OP20
112bq5_R_U11_A12NANNANT02.16OP27
122bq5_R_A12_C13OPNOP2770.65OP27
132bq5_R_C13_C14AAAAA00930.15AA00
142bq5_R_C14_C15AAAAA00780.25AA00
152bq5_R_C15_A16AAAAA00830.14AA00
162bq5_R_A16_U17AAAAA00770.17AA00
172bq5_R_U17_G18AAAAA00870.17AA00
182bq5_R_G18_U19AAAAA00740.18AA00
192bq5_S_C2_A3AAAAA04740.32AA04
202bq5_S_A3_U4AAAAA00180.38AA00
212bq5_S_U4_G5AAAAA00600.23AA00
222bq5_S_G5_A6NANNANT00.94OP29
232bq5_S_A6_G7NANNANT00.78OP31
242bq5_S_G7_G8AAuAA12590.32AA12
252bq5_S_G8_A9AAAAA00550.41AA00
262bq5_S_A9_U10OPNOP09220.41OP09
272bq5_S_U10_U11NANNANT00.45OP20
282bq5_S_U11_A12NANNANT02.21OP27
292bq5_S_A12_C13NANNANT00.58OP27
302bq5_S_C13_C14AAAAA00840.14AA00
312bq5_S_C14_C15AAAAA00760.27AA00
322bq5_S_C15_A16AAAAA00860.17AA00
332bq5_S_A16_U17AAAAA00580.27AA00
342bq5_S_U17_G18NANNANT00.45AA12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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