DNATCO v3.2: results

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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	2be0_A_G1_C2	AAw	AA01	69	0.30	AA01
02	2be0_A_C2_G3	AAA	AA08	90	0.22	AA08
03	2be0_A_G3_U4	AAA	AA00	84	0.29	AA00
04	2be0_A_U4_C5	AAA	AA00	86	0.18	AA00
05	2be0_A_C5_A6	AAA	AA00	97	0.14	AA00
06	2be0_A_A6_C7	AAA	AA00	87	0.19	AA00
07	2be0_A_C7_A8	AAA	AA08	93	0.10	AA08
08	2be0_A_A8_C9	AAA	AA00	93	0.13	AA00
09	2be0_A_C9_C10	AAA	AA00	76	0.15	AA00
10	2be0_A_C10_G11	AAA	AA00	82	0.14	AA00
11	2be0_A_G11_G12	AAA	AA00	77	0.14	AA00
12	2be0_A_G12_U13	AAA	AA00	79	0.13	AA00
13	2be0_A_U13_G14	AAA	AA00	81	0.18	AA00
14	2be0_A_G14_A15	NAN	NANT	0	1.95	IC01
15	2be0_A_A15_A16	NAN	NANT	0	0.47	AA06
16	2be0_A_A16_G17	NAN	NANT	0	0.93	OP11
17	2be0_A_G17_U18	NAN	NANT	0	0.67	AA12
18	2be0_A_U18_C19	AAA	AA08	81	0.20	AA08
19	2be0_A_C19_G20	AAA	AA00	66	0.25	AA00
20	2be0_A_G20_C21	AAw	AA01	68	0.24	AA01
21	2be0_B_G22_C23	AAw	AA01	71	0.30	AA01
22	2be0_B_C23_G24	AAA	AA08	86	0.21	AA08
23	2be0_B_G24_U25	AAA	AA00	83	0.27	AA00
24	2be0_B_U25_C26	AAA	AA00	82	0.20	AA00
25	2be0_B_C26_A27	AAA	AA00	96	0.17	AA00
26	2be0_B_A27_C28	AAA	AA00	87	0.20	AA00
27	2be0_B_C28_A29	AAA	AA00	79	0.14	AA00
28	2be0_B_A29_C30	AAA	AA00	81	0.15	AA00
29	2be0_B_C30_C31	AAA	AA00	77	0.18	AA00
30	2be0_B_C31_G32	AAA	AA00	91	0.14	AA00
31	2be0_B_G32_G33	AAA	AA00	83	0.12	AA00
32	2be0_B_G33_U34	AAA	AA00	84	0.14	AA00
33	2be0_B_U34_G35	AAA	AA00	66	0.20	AA00
34	2be0_B_G35_A36	NAN	NANT	0	1.82	OP17
35	2be0_B_A36_A37	NAN	NANT	0	0.51	AA06
36	2be0_B_A37_G38	NAN	NANT	0	0.91	OP11
37	2be0_B_G38_U39	NAN	NANT	0	0.65	AA12
38	2be0_B_U39_C40	AAA	AA08	83	0.18	AA08
39	2be0_B_C40_G41	AAA	AA00	82	0.21	AA00
40	2be0_B_G41_C42	AAw	AA01	70	0.28	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

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Z

N