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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA polymerase lambda in complex with Dttp and a DNA duplex containing an unpaired Dtmp

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012bcv_D_DG1_DC2A-BAB05310.23AB05
022bcv_D_DC2_DC3BBBBB00880.13BB00
032bcv_D_DC3_DG4B12BB04750.24BB04
042bcv_P_DC1_DA2A-BAB01660.23AB01
052bcv_P_DA2_DG3B-ABA05890.23BA05
062bcv_P_DG3_DT4BBBBB01520.20BB01
072bcv_P_DT4_DA5B-ABA05350.33BA05
082bcv_T_DC1_DG2BBBBB00800.38BB00
092bcv_T_DG2_DG3BB2BB07750.24BB07
102bcv_T_DG3_DC4BBBBB01690.28BB01
112bcv_T_DC4_DA5NANNANT01.19OP21
122bcv_T_DA5_DG6BBBBB00700.25BB00
132bcv_T_DG6_DT7NANNANT01.06OP13
142bcv_T_DT7_DT8NANNANT00.87OP06
152bcv_T_DT8_DA9A-BAB04730.22AB04
162bcv_T_DA9_DC10BBwBB03640.37BB03
172bcv_T_DC10_DT11BBBBB00460.34BB00
182bcv_T_DT11_DG12BBBBB00620.39BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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