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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

RNA recognition by the Vts1 SAM domain

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012b6g_B_G1_G2AAAAA00370.32AA00
022b6g_B_G2_A3AAAAA00930.22AA00
032b6g_B_A3_G4AAAAA00760.18AA00
042b6g_B_G4_G5AAAAA00760.21AA00
052b6g_B_G5_C6AAAAA00670.23AA00
062b6g_B_C6_U7AAAAA00230.30AA00
072b6g_B_U7_C8NANNANT00.33AA01
082b6g_B_C8_U9NANNANT01.40AB02
092b6g_B_U9_G10NANNANT01.29AB04
102b6g_B_G10_G11NANNANT01.14OP19
112b6g_B_G11_C12NANNANT01.68OP23
122b6g_B_C12_A13NANNANT00.54OP06
132b6g_B_A13_G14AAAAA00690.22AA00
142b6g_B_G14_C15AAAAA00950.20AA00
152b6g_B_C15_U16AAAAA00670.40AA00
162b6g_B_U16_U17AAAAA00620.34AA00
172b6g_B_U17_U18AAAAA00620.42AA00
182b6g_B_U18_C19AAAAA00240.39AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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