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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsid

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012b2g_R_A302_U303AAwAA06650.21AA06
022b2g_R_U303_G304AAAAA08650.27AA08
032b2g_R_G304_A305NANNANT01.07OP29
042b2g_R_A305_G306NANNANT00.85OP31
052b2g_R_G306_G307NANNANT00.39AA03
062b2g_R_G307_A308AAwAA01320.37AA01
072b2g_R_A308_U309NANNANT00.45OP04
082b2g_R_U309_U310NANNANT02.26OP15
092b2g_R_U310_A311NANNANT01.34OP22
102b2g_R_A311_C312NANNANT00.67OP27
112b2g_R_C312_C313AAAAA00740.25AA00
122b2g_R_C313_C314AAAAA00460.34AA00
132b2g_R_C314_A315AAAAA00930.12AA00
142b2g_R_A315_U316AAAAA00500.25AA00
152b2g_R_U316_G317NANNANT00.71AA12
162b2g_S_A402_U403NANNANT00.41AA03
172b2g_S_U403_G404NANNANT00.42AA01
182b2g_S_G404_A405NANNANT00.72OP30
192b2g_S_A405_G406NANNANT00.68OP31
202b2g_S_G406_G407AAAAA00280.33AA00
212b2g_S_G407_A408AAAAA00280.25AA00
222b2g_S_A408_U409NANNANT02.15OP01
232b2g_S_U409_U410NANNANT02.21OP15
242b2g_S_U410_A411NANNANT02.60OP09
252b2g_S_A411_C412NANNANT00.52OP27
262b2g_S_C412_C413AAAAA04280.33AA04
272b2g_S_C413_C414NANNANT00.51AA04
282b2g_S_C414_A415NANNANT00.37AA06
292b2g_S_A415_U416AAAAA03320.34AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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