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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Class I GTP aptamer

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012au4_A_G1_G2NANNANT00.87AB05
022au4_A_G2_G3NANNANT00.69BA10
032au4_A_G3_A4AAAAA02100.31AA02
042au4_A_A4_C5NANNANT00.61AA11
052au4_A_C5_G6AAAAA02100.42AA02
062au4_A_G6_A7NANNANT00.70BB13
072au4_A_A7_A8NANNANT01.20AA11
082au4_A_A8_G9NANNANT00.43IC04
092au4_A_G9_U10NANNANT01.06OP16
102au4_A_U10_G11NANNANT01.77OP17
112au4_A_G11_G12NANNANT01.32AA02
122au4_A_G12_U13NANNANT01.95OP18
132au4_A_U13_U14NANNANT02.19OP24
142au4_A_U14_G15NANNANT00.42AA10
152au4_A_G15_G16NANNANT00.51AA10
162au4_A_G16_G17NANNANT00.97AA10
172au4_A_G17_C18NANNANT00.69AA11
182au4_A_C18_G19NANNANT00.61AA01
192au4_A_G19_C20NANNANT00.88BB13
202au4_A_C20_U21NANNANT00.49AA05
212au4_A_U21_U22NANNANT00.68OP03
222au4_A_U22_C23NANNANT01.35IC04
232au4_A_C23_G24NANNANT00.41ZZ1S
242au4_A_G24_G25NANNANT00.61AA05
252au4_A_G25_C26NANNANT00.59AA11
262au4_A_C26_G27NANNANT00.60BA10
272au4_A_G27_U28NANNANT00.93BB13
282au4_A_U28_G29NANNANT01.14BB1S
292au4_A_G29_U30NANNANT02.07OPS1
302au4_A_U30_G31NANNANT01.13OP31
312au4_A_G31_A32NANNANT00.60IC06
322au4_A_A32_A33NANNANT01.05BA16
332au4_A_A33_A34NANNANT00.80AA10
342au4_A_A34_A35NANNANT01.11BB2S
352au4_A_A35_C36NANNANT00.99AA11
362au4_A_C36_G37NANNANT00.39AB04
372au4_A_G37_U38NANNANT00.89BB13
382au4_A_U38_C39AAAAA04130.37AA04
392au4_A_C39_C40NANNANT00.50AA01
402au4_A_C40_C41NANNANT00.65BB13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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