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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

oxoG-modified Preinsertion Binary Complex

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012asj_D_DG801_DG802B-ABA08740.31BA08
022asj_D_DG802_DT803NANNANT00.47AA02
032asj_D_DT803_DT804BBBBB00200.37BB00
042asj_D_DT804_DG805B-ABA05210.36BA05
052asj_D_DG805_DG806A-BAB01580.39AB01
062asj_D_DG806_DA807BBBBB00460.34BB00
072asj_D_DA807_DT808NANNANT00.81BB02
082asj_D_DT808_DG809BBBBB0080.43BB00
092asj_D_DG809_DG810BBBBB01700.19BB01
102asj_D_DG810_DT811BBBBB00400.31BB00
112asj_D_DT811_DA812BBBBB01230.21BB01
122asj_E_DC907_DT908BBBBB00530.25BB00
132asj_E_DT908_DA909BBBBB01220.15BB01
142asj_E_DA909_DC910BBBBB01510.11BB01
152asj_E_DC910_DC911B-ABA05230.38BA05
162asj_E_DC911_DA912B-ABA05360.38BA05
172asj_E_DA912_DT913A-BAB03150.48AB03
182asj_E_DT913_DC914BBBBB01350.27BB01
192asj_E_DC914_DC915NANNANT00.51BB17
202asj_E_DC915_DA916NANNANT00.28BA01
212asj_E_DA916_DA917A-BAB01450.23AB01
222asj_E_DA917_DC918BBBBB00600.33BB00
232asj_E_DC918_DC919B-ABA08480.36BA08
242asj_H_DG1801_DG1802B-ABA01120.35BA01
252asj_H_DG1802_DT1803A-BAB01400.23AB01
262asj_H_DT1803_DT1804NANNANT00.29BA10
272asj_H_DT1804_DG1805NANNANT00.42BB10
282asj_H_DG1805_DG1806B-ABA01180.30BA01
292asj_H_DG1806_DA1807A-BAB01710.23AB01
302asj_H_DA1807_DT1808BBBBB01320.29BB01
312asj_H_DT1808_DG1809BBBBB00230.42BB00
322asj_H_DG1809_DG1810BBwBB02370.24BB02
332asj_H_DG1810_DT1811BBBBB00620.27BB00
342asj_H_DT1811_DA1812BBBBB01410.25BB01
352asj_J_DC1907_DT1908BBBBB01260.31BB01
362asj_J_DT1908_DA1909NANNANT00.31BB17
372asj_J_DA1909_DC1910NANNANT00.35AB03
382asj_J_DC1910_DC1911A-BAB01270.41AB01
392asj_J_DC1911_DA1912BBBBB00330.32BB00
402asj_J_DA1912_DT1913NANNANT00.43BB10
412asj_J_DT1913_DC1914B12BB04210.26BB04
422asj_J_DC1914_DC1915NANNANT00.37BB10
432asj_J_DC1915_DA1916B-ABA08750.16BA08
442asj_J_DA1916_DA1917NANNANT00.46AB04
452asj_J_DA1917_DC1918B-ABA01500.31BA01
462asj_J_DC1918_DC1919NANNANT00.65AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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