DNATCO v3.2: results

oxoG-modified Preinsertion Binary Complex

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	2asj_D_DG801_DG802	B-A	BA08	74	0.31	BA08
02	2asj_D_DG802_DT803	NAN	NANT	0	0.47	AA02
03	2asj_D_DT803_DT804	BBB	BB00	20	0.37	BB00
04	2asj_D_DT804_DG805	B-A	BA05	21	0.36	BA05
05	2asj_D_DG805_DG806	A-B	AB01	58	0.39	AB01
06	2asj_D_DG806_DA807	BBB	BB00	46	0.34	BB00
07	2asj_D_DA807_DT808	NAN	NANT	0	0.81	BB02
08	2asj_D_DT808_DG809	BBB	BB00	8	0.43	BB00
09	2asj_D_DG809_DG810	BBB	BB01	70	0.19	BB01
10	2asj_D_DG810_DT811	BBB	BB00	40	0.31	BB00
11	2asj_D_DT811_DA812	BBB	BB01	23	0.21	BB01
12	2asj_E_DC907_DT908	BBB	BB00	53	0.25	BB00
13	2asj_E_DT908_DA909	BBB	BB01	22	0.15	BB01
14	2asj_E_DA909_DC910	BBB	BB01	51	0.11	BB01
15	2asj_E_DC910_DC911	B-A	BA05	23	0.38	BA05
16	2asj_E_DC911_DA912	B-A	BA05	36	0.38	BA05
17	2asj_E_DA912_DT913	A-B	AB03	15	0.48	AB03
18	2asj_E_DT913_DC914	BBB	BB01	35	0.27	BB01
19	2asj_E_DC914_DC915	NAN	NANT	0	0.51	BB17
20	2asj_E_DC915_DA916	NAN	NANT	0	0.28	BA01
21	2asj_E_DA916_DA917	A-B	AB01	45	0.23	AB01
22	2asj_E_DA917_DC918	BBB	BB00	60	0.33	BB00
23	2asj_E_DC918_DC919	B-A	BA08	48	0.36	BA08
24	2asj_H_DG1801_DG1802	B-A	BA01	12	0.35	BA01
25	2asj_H_DG1802_DT1803	A-B	AB01	40	0.23	AB01
26	2asj_H_DT1803_DT1804	NAN	NANT	0	0.29	BA10
27	2asj_H_DT1804_DG1805	NAN	NANT	0	0.42	BB10
28	2asj_H_DG1805_DG1806	B-A	BA01	18	0.30	BA01
29	2asj_H_DG1806_DA1807	A-B	AB01	71	0.23	AB01
30	2asj_H_DA1807_DT1808	BBB	BB01	32	0.29	BB01
31	2asj_H_DT1808_DG1809	BBB	BB00	23	0.42	BB00
32	2asj_H_DG1809_DG1810	BBw	BB02	37	0.24	BB02
33	2asj_H_DG1810_DT1811	BBB	BB00	62	0.27	BB00
34	2asj_H_DT1811_DA1812	BBB	BB01	41	0.25	BB01
35	2asj_J_DC1907_DT1908	BBB	BB01	26	0.31	BB01
36	2asj_J_DT1908_DA1909	NAN	NANT	0	0.31	BB17
37	2asj_J_DA1909_DC1910	NAN	NANT	0	0.35	AB03
38	2asj_J_DC1910_DC1911	A-B	AB01	27	0.41	AB01
39	2asj_J_DC1911_DA1912	BBB	BB00	33	0.32	BB00
40	2asj_J_DA1912_DT1913	NAN	NANT	0	0.43	BB10
41	2asj_J_DT1913_DC1914	B12	BB04	21	0.26	BB04
42	2asj_J_DC1914_DC1915	NAN	NANT	0	0.37	BB10
43	2asj_J_DC1915_DA1916	B-A	BA08	75	0.16	BA08
44	2asj_J_DA1916_DA1917	NAN	NANT	0	0.46	AB04
45	2asj_J_DA1917_DC1918	B-A	BA01	50	0.31	BA01
46	2asj_J_DC1918_DC1919	NAN	NANT	0	0.65	AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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A

A-B

B-A

B

IC

OPN

Z

N

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