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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure (II) of Nova-1 KH1/KH2 domain tandem with 25nt RNA hairpin

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012anr_B_C201_5BU202AAAAA04590.34AA04
022anr_B_5BU202_C203AAAAA00880.18AA00
032anr_B_C203_G204AAAAA00750.14AA00
042anr_B_G204_C205AAAAA00860.14AA00
052anr_B_C205_G206AAAAA00220.52AA00
062anr_B_G206_G207A-BAB05760.31AB05
072anr_B_G207_A208OPNOP10710.28OP10
082anr_B_A208_U209AAAAA08770.35AA08
092anr_B_U209_C210AAAAA08780.26AA08
102anr_B_C210_A211AAAAA08360.46AA08
112anr_B_A211_G212NANNANT00.54AB03
122anr_B_G212_U213NANNANT01.01OP29
132anr_B_U213_C214OPNOP20320.79OP20
142anr_B_C214_A215NANNANT00.46OP22
152anr_B_A215_C216AAAAA00830.27AA00
162anr_B_C216_C217AAAAA00380.44AA00
172anr_B_C217_C218AAAAA00590.35AA00
182anr_B_C218_A219AAuAA12500.51AA12
192anr_B_A219_A220AAAAA00670.27AA00
202anr_B_A220_G221AAAAA08380.47AA08
212anr_B_G221_C222AAAAA00780.23AA00
222anr_B_C222_G223AAAAA00830.19AA00
232anr_B_G223_A224AAAAA00890.12AA00
242anr_B_A224_G225AAAAA00940.12AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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