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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

THE CRYSTAL STRUCTURE OF D(G-G-G-G-C-C-C-C). A MODEL FOR POLY(DG).POLY(DC)

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012ana_A_DG1_DG2AAAAA04810.29AA04
022ana_A_DG2_DG3AAAAA00850.17AA00
032ana_A_DG3_DG4AAAAA00410.23AA00
042ana_A_DG4_DC5AAAAA00900.17AA00
052ana_A_DC5_DC6AAAAA00850.16AA00
062ana_A_DC6_DC7AAAAA00630.23AA00
072ana_A_DC7_DC8AAAAA00640.25AA00
082ana_B_DG9_DG10AAAAA00660.21AA00
092ana_B_DG10_DG11AAAAA00890.10AA00
102ana_B_DG11_DG12AAAAA00720.13AA00
112ana_B_DG12_DC13AAAAA08880.18AA08
122ana_B_DC13_DC14AAAAA00390.23AA00
132ana_B_DC14_DC15AAAAA04780.24AA04
142ana_B_DC15_DC16NANNANT00.43AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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