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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

SOLUTION NMR STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012a9l_A_G1_G2AAAAA00540.22AA00
022a9l_A_G2_G3AAAAA00540.23AA00
032a9l_A_G3_U4AAAAA00700.18AA00
042a9l_A_U4_G5AAAAA00540.25AA00
052a9l_A_G5_A6NANNANT01.07AA11
062a9l_A_A6_C7NANNANT01.16OP12
072a9l_A_C7_U8AAAAA00900.17AA00
082a9l_A_U8_C9AAAAA00620.28AA00
092a9l_A_C9_C10AAAAA00720.28AA00
102a9l_A_C10_A11NANNANT00.70AA10
112a9l_A_A11_G12NANNANT01.32AA12
122a9l_A_G12_A13NANNANT01.46BB08
132a9l_A_A13_G14NANNANT00.56BA08
142a9l_A_G14_G15AAAAA00780.20AA00
152a9l_A_G15_U16AAAAA00710.25AA00
162a9l_A_U16_C17AAAAA00610.28AA00
172a9l_A_C17_G18AAAAA08460.49AA08
182a9l_A_G18_A19NANNANT00.81OP04
192a9l_A_A19_G20AAAAA09370.30AA09
202a9l_A_G20_A21AAAAA02770.22AA02
212a9l_A_A21_G22NANNANT00.66AA04
222a9l_A_G22_A23AAAAA00880.10AA00
232a9l_A_A23_C24AAAAA00730.16AA00
242a9l_A_C24_C25A-BAB05170.33AB05
252a9l_A_C25_G26NANNANT01.60OP17
262a9l_A_G26_G27AAuAA12240.54AA12
272a9l_A_G27_A28AAAAA00250.41AA00
282a9l_A_A28_G29AAAAA00550.29AA00
292a9l_A_G29_A30AAAAA00510.29AA00
302a9l_A_A30_U31NANNANT00.82OP08
312a9l_A_U31_A32NANNANT00.95AA04
322a9l_A_A32_U33NANNANT00.38AA04
332a9l_A_U33_C34AAAAA00660.26AA00
342a9l_A_C34_A35AAAAA00440.34AA00
352a9l_A_A35_C36AAAAA00520.22AA00
362a9l_A_C36_C37AAAAA00570.26AA00
372a9l_A_C37_C38AAAAA00490.31AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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