DNATCO v4.1: results

Crystal structure of an active group I ribozyme-product complex

Results of the assignment of 230 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1y0q_A_G9_A10	AAA	AA00	25	0.52	AA00
002	1y0q_A_A10_G11	AAA	AA00	69	0.13	AA00
003	1y0q_A_G11_C12	AAA	AA00	30	0.29	AA00
004	1y0q_A_C12_C13	AAA	AA08	71	0.29	AA08
005	1y0q_A_C13_U14	AAA	AA00	86	0.20	AA00
006	1y0q_A_U14_U15	AAA	AA00	29	0.42	AA00
007	1y0q_A_U15_U16	AAA	AA08	78	0.35	AA08
008	1y0q_A_U16_A17	AAA	AA00	80	0.11	AA00
009	1y0q_A_A17_U18	AAu	AA12	42	0.38	AA12
010	1y0q_A_U18_A19	AAA	AA00	77	0.13	AA00
011	1y0q_A_A19_C20	AAA	AA08	90	0.29	AA08
012	1y0q_A_C20_A21	AAA	AA00	74	0.20	AA00
013	1y0q_A_A21_G22	AAA	AA00	69	0.29	AA00
014	1y0q_A_G22_U23	OPN	OP03	34	0.34	OP03
015	1y0q_A_U23_A24	NAN	NANT	0	0.55	AA09
016	1y0q_A_A24_A25	AAA	AA08	51	0.32	AA08
017	1y0q_A_A25_U26	NAN	NANT	0	0.37	AA05
018	1y0q_A_U26_G27	AAA	AA08	69	0.23	AA08
019	1y0q_A_G27_U28	AAA	AA00	41	0.30	AA00
020	1y0q_A_U28_A29	AAA	AA08	48	0.36	AA08
021	1y0q_A_A29_U30	AAA	AA00	58	0.24	AA00
022	1y0q_A_U30_A31	AAA	AA00	66	0.20	AA00
023	1y0q_A_A31_U32	AAA	AA00	51	0.21	AA00
024	1y0q_A_U32_C33	AAA	AA00	81	0.16	AA00
025	1y0q_A_C33_G34	AAA	AA03	41	0.44	AA03
026	1y0q_A_G34_A35	NAN	NANT	0	1.48	AA12
027	1y0q_A_A35_A36	NAN	NANT	0	1.20	IC04
028	1y0q_A_A36_A37	NAN	NANT	0	0.52	BB13
029	1y0q_A_A37_A38	AAA	AA08	44	0.48	AA08
030	1y0q_A_A38_A39	OPN	OP06	42	0.56	OP06
031	1y0q_A_A39_U40	AAA	AA00	34	0.26	AA00
032	1y0q_A_U40_C41	AAA	AA00	75	0.20	AA00
033	1y0q_A_C41_C42	AAA	AA00	80	0.19	AA00
034	1y0q_A_C42_U43	AAA	AA00	71	0.22	AA00
035	1y0q_A_U43_C44	AAA	AA04	45	0.43	AA04
036	1y0q_A_C44_U45	AAA	AA09	70	0.38	AA09
037	1y0q_A_U45_A46	NAN	NANT	0	1.02	OP01
038	1y0q_A_A46_A47	AAA	AA09	25	0.33	AA09
039	1y0q_A_A47_U48	NAN	NANT	0	0.89	AA00
040	1y0q_A_U48_U49	OPN	OP01	40	0.37	OP01
041	1y0q_A_U49_C50	AAA	AA08	84	0.32	AA08
042	1y0q_A_C50_A51	AAA	AA00	65	0.23	AA00
043	1y0q_A_A51_G52	AAw	AA10	67	0.23	AA10
044	1y0q_A_G52_G53	NAN	NANT	0	0.52	AA12
045	1y0q_A_G53_G54	AAA	AA04	51	0.52	AA04
046	1y0q_A_G54_A55	AAA	AA00	36	0.42	AA00
047	1y0q_A_A55_A56	AAu	AA07	75	0.19	AA07
048	1y0q_A_A56_C57	AAA	AA08	41	0.60	AA08
049	1y0q_A_C57_A58	NAN	NANT	0	1.47	AA03
050	1y0q_A_A58_C59	NAN	NANT	0	1.01	OP07
051	1y0q_A_C59_C60	AAA	AA00	49	0.36	AA00
052	1y0q_A_C60_U61	AAA	AA00	62	0.31	AA00
053	1y0q_A_U61_A62	AAA	AA00	84	0.21	AA00
054	1y0q_A_A78_G79	AAA	AA00	32	0.35	AA00
055	1y0q_A_G79_G80	AAA	AA00	71	0.23	AA00
056	1y0q_A_G80_C81	AAA	AA08	72	0.39	AA08
057	1y0q_A_C81_A82	AAA	AA00	66	0.30	AA00
058	1y0q_A_A82_A83	AAu	AA12	76	0.46	AA12
059	1y0q_A_A83_U84	NAN	NANT	0	0.84	AA08
060	1y0q_A_U84_C85	AAu	AA12	50	0.34	AA12
061	1y0q_A_C85_C86	AAw	AA01	37	0.26	AA01
062	1y0q_A_C86_U87	AAA	AA00	12	0.43	AA00
063	1y0q_A_U87_G88	AAA	AA00	78	0.14	AA00
064	1y0q_A_G88_A89	AAA	AA00	84	0.16	AA00
065	1y0q_A_A89_G90	AAA	AA00	70	0.34	AA00
066	1y0q_A_G90_C91	AAA	AA00	67	0.33	AA00
067	1y0q_A_C91_U92	AAA	AA00	38	0.36	AA00
068	1y0q_A_U92_A93	AAu	AA12	43	0.57	AA12
069	1y0q_A_A93_A94	AAA	AA08	23	0.46	AA08
070	1y0q_A_A94_G95	AAA	AA00	34	0.36	AA00
071	1y0q_A_G95_C96	AAA	AA00	17	0.26	AA00
072	1y0q_A_C96_U97	AAu	AA12	38	0.54	AA12
073	1y0q_A_U97_C98	AAA	AA00	62	0.25	AA00
074	1y0q_A_C98_U99	AAA	AA00	63	0.21	AA00
075	1y0q_A_U99_U100	AAA	AA00	82	0.23	AA00
076	1y0q_A_U100_A101	AAA	AA00	80	0.14	AA00
077	1y0q_A_A101_G102	AAA	AA00	67	0.23	AA00
078	1y0q_A_G102_U103	OPN	OP04	19	0.36	OP04
079	1y0q_A_U103_A104	AAA	AA08	45	0.44	AA08
080	1y0q_A_A104_A105	AAA	AA00	7	0.29	AA00
081	1y0q_A_A105_U106	NAN	NANT	0	1.14	AA04
082	1y0q_A_U106_A107	AAA	AA08	76	0.31	AA08
083	1y0q_A_A107_A108	AAA	AA00	41	0.26	AA00
084	1y0q_A_A108_G109	AAA	AA00	66	0.20	AA00
085	1y0q_A_G109_A110	AAA	AA00	16	0.37	AA00
086	1y0q_A_A110_G111	AAw	AA10	68	0.23	AA10
087	1y0q_A_G111_A112	AAA	AA08	20	0.33	AA08
088	1y0q_A_A112_A113	NAN	NANT	0	0.80	AB2S
089	1y0q_A_A113_A114	SYN	AAS1	19	0.44	AAS1
090	1y0q_A_A114_G115	AAA	AA00	64	0.26	AA00
091	1y0q_A_G115_U116	AAw	AA01	43	0.29	AA01
092	1y0q_A_U116_G117	NAN	NANT	0	0.73	AA08
093	1y0q_A_G117_C118	NAN	NANT	0	0.40	ZZ01
094	1y0q_A_C118_A119	NAN	NANT	0	1.52	OP29
095	1y0q_A_A119_A120	NAN	NANT	0	1.71	OP05
096	1y0q_A_A120_C121	NAN	NANT	0	1.51	OP05
097	1y0q_A_C121_G122	NAN	NANT	0	0.53	AA10
098	1y0q_A_G122_A123	AAA	AA00	17	0.36	AA00
099	1y0q_A_A123_C124	AAA	AA00	79	0.18	AA00
100	1y0q_A_C124_U125	NAN	NANT	0	0.36	AA03
101	1y0q_A_U125_A126	NAN	NANT	0	0.98	AA06
102	1y0q_A_A126_U127	NAN	NANT	0	1.88	IC03
103	1y0q_A_U127_U128	AAA	AA00	44	0.32	AA00
104	1y0q_A_U128_C129	AAA	AA00	70	0.23	AA00
105	1y0q_A_C129_C130	AAA	AA00	80	0.18	AA00
106	1y0q_A_C130_G131	AAA	AA00	49	0.40	AA00
107	1y0q_A_G131_A132	OPN	OP04	61	0.33	OP04
108	1y0q_A_A132_U133	NAN	NANT	0	0.49	AA04
109	1y0q_A_U133_A134	AAA	AA00	89	0.14	AA00
110	1y0q_A_A134_G135	NAN	NANT	0	1.04	AA08
111	1y0q_A_G135_G136	AAA	AA00	70	0.20	AA00
112	1y0q_A_G136_A137	AAA	AA00	83	0.24	AA00
113	1y0q_A_A137_A138	NAN	NANT	0	0.24	AA10
114	1y0q_A_A138_G139	NAN	NANT	0	0.97	AA08
115	1y0q_A_G139_U140	NAN	NANT	0	0.87	AA12
116	1y0q_A_U140_A141	AAA	AA04	33	0.41	AA04
117	1y0q_A_A141_G142	AAA	AA04	19	0.58	AA04
118	1y0q_A_G142_G143	AAw	AA01	41	0.28	AA01
119	1y0q_A_G143_G144	AAA	AA00	14	0.33	AA00
120	1y0q_A_G144_U145	AAA	AA00	81	0.20	AA00
121	1y0q_A_U145_C146	AAA	AA00	83	0.20	AA00
122	1y0q_A_C146_A147	AAA	AA00	51	0.28	AA00
123	1y0q_A_A147_A148	NAN	NANT	0	0.50	AA06
124	1y0q_A_A148_G149	NAN	NANT	0	0.95	AA05
125	1y0q_A_G149_U150	AAw	AA01	59	0.28	AA01
126	1y0q_A_U150_G151	NAN	NANT	0	0.69	OP01
127	1y0q_A_G151_A152	AAA	AA04	29	0.41	AA04
128	1y0q_A_A152_C153	AAA	AA00	54	0.21	AA00
129	1y0q_A_C153_U154	AAA	AA08	63	0.26	AA08
130	1y0q_A_U154_C155	AAw	AA01	62	0.35	AA01
131	1y0q_A_C155_G156	NAN	NANT	0	0.77	AA04
132	1y0q_A_G156_A157	NAN	NANT	0	0.34	OP08
133	1y0q_A_A157_A158	NAN	NANT	0	1.02	OP08
134	1y0q_A_A158_A159	NAN	NANT	0	1.11	AA01
135	1y0q_A_A159_U160	NAN	NANT	0	2.27	OP01
136	1y0q_A_U160_G161	NAN	NANT	0	0.55	OP12
137	1y0q_A_G161_G162	AAA	AA00	22	0.29	AA00
138	1y0q_A_G162_G163	AAA	AA00	63	0.23	AA00
139	1y0q_A_G163_G164	AAA	AA00	48	0.31	AA00
140	1y0q_A_G164_A165	AAw	AA01	60	0.21	AA01
141	1y0q_A_A165_U166	AAA	AA08	77	0.17	AA08
142	1y0q_A_U166_U167	AAA	AA00	47	0.36	AA00
143	1y0q_A_U167_A168	AAA	AA08	85	0.36	AA08
144	1y0q_A_A168_C169	AAA	AA00	35	0.43	AA00
145	1y0q_A_C169_C170	AAA	AA00	51	0.33	AA00
146	1y0q_A_C170_C171	AAA	AA00	49	0.41	AA00
147	1y0q_A_C171_U172	AAA	AA08	43	0.55	AA08
148	1y0q_A_U172_U173	NAN	NANT	0	1.50	OP29
149	1y0q_A_U173_C174	NAN	NANT	0	1.40	OP31
150	1y0q_A_C174_U175	NAN	NANT	0	1.30	AA11
151	1y0q_A_U175_A176	NAN	NANT	0	1.77	AA10
152	1y0q_A_A176_G177	AAA	AA04	43	0.24	AA04
153	1y0q_A_G177_G178	AAA	AA00	61	0.37	AA00
154	1y0q_A_G178_G179	AAA	AA00	64	0.22	AA00
155	1y0q_A_G179_U180	AAA	AA00	34	0.35	AA00
156	1y0q_A_U180_A181	AAA	AA00	73	0.32	AA00
157	1y0q_A_A181_G182	NAN	NANT	0	1.67	OP27
158	1y0q_A_G182_U183	AAw	AA10	22	0.47	AA10
159	1y0q_A_U183_G184	NAN	NANT	0	0.82	AA08
160	1y0q_A_G184_A185	NAN	NANT	0	1.81	AA11
161	1y0q_A_A185_U186	NAN	NANT	0	2.28	OP04
162	1y0q_A_U186_A187	NAN	NANT	0	1.23	OP07
163	1y0q_A_A187_U188	NAN	NANT	0	1.23	BB14
164	1y0q_A_U188_A189	AAA	AA04	76	0.33	AA04
165	1y0q_A_A189_G190	AAA	AA08	88	0.14	AA08
166	1y0q_A_G190_U191	AAA	AA08	68	0.23	AA08
167	1y0q_A_U191_C192	AAw	AA06	68	0.39	AA06
168	1y0q_A_C192_U193	AAA	AA08	60	0.43	AA08
169	1y0q_A_U193_G194	NAN	NANT	0	0.97	OP03
170	1y0q_A_G194_A195	NAN	NANT	0	2.00	OP01
171	1y0q_A_A195_A196	NAN	NANT	0	0.54	AA10
172	1y0q_A_A196_C197	NAN	NANT	0	1.43	IC04
173	1y0q_A_C197_A198	NAN	NANT	0	0.95	OP17
174	1y0q_A_A198_U199	NAN	NANT	0	0.96	OP06
175	1y0q_A_U199_A200	AAA	AA00	34	0.27	AA00
176	1y0q_A_A200_U201	AAA	AA08	76	0.26	AA08
177	1y0q_A_U201_A202	AAA	AA04	58	0.41	AA04
178	1y0q_A_A202_U203	AAA	AA00	40	0.36	AA00
179	1y0q_A_U203_G204	AAA	AA04	63	0.34	AA04
180	1y0q_A_G204_G205	AAu	AA12	43	0.52	AA12
181	1y0q_A_G205_A206	NAN	NANT	0	0.30	OP03
182	1y0q_A_A206_A207	AAA	AA08	23	0.61	AA08
183	1y0q_A_A207_A208	AAA	AA00	49	0.38	AA00
184	1y0q_A_A208_C209	AAw	AA05	79	0.27	AA05
185	1y0q_A_C209_A210	AAA	AA08	85	0.28	AA08
186	1y0q_A_A210_U211	AAA	AA00	55	0.38	AA00
187	1y0q_A_U211_A212	AAA	AA00	59	0.24	AA00
188	1y0q_A_A212_U213	AAw	AA06	69	0.23	AA06
189	1y0q_A_U213_A214	AAA	AA00	33	0.40	AA00
190	1y0q_A_A214_G215	AAA	AA00	53	0.20	AA00
191	1y0q_A_G215_A216	NAN	NANT	0	0.45	AA13
192	1y0q_A_A216_A217	NAN	NANT	0	1.95	OP30
193	1y0q_A_A217_G218	NAN	NANT	0	1.39	AB02
194	1y0q_A_G218_G219	AAA	AA00	64	0.20	AA00
195	1y0q_A_G219_A220	AAA	AA00	71	0.31	AA00
196	1y0q_A_A220_U221	AAA	AA00	30	0.26	AA00
197	1y0q_A_U221_A222	AAA	AA00	29	0.32	AA00
198	1y0q_A_A222_G223	AAw	AA01	70	0.24	AA01
199	1y0q_A_G223_G224	AAA	AA08	55	0.33	AA08
200	1y0q_A_G224_A225	AAw	AA06	80	0.34	AA06
201	1y0q_A_A225_G226	AAA	AA08	70	0.38	AA08
202	1y0q_A_G226_U227	AAA	AA00	71	0.25	AA00
203	1y0q_A_U227_A228	OPN	OP04	70	0.23	OP04
204	1y0q_A_A228_A229	AAA	AA08	93	0.27	AA08
205	1y0q_A_A229_C230	AAA	AA08	81	0.22	AA08
206	1y0q_A_C230_G231	AAA	AA00	55	0.33	AA00
207	1y0q_A_G231_A232	AAw	AA06	72	0.32	AA06
208	1y0q_A_A232_A233	AAA	AA08	77	0.32	AA08
209	1y0q_A_A233_C234	AAA	AA00	70	0.26	AA00
210	1y0q_A_C234_C235	AAA	AA00	69	0.24	AA00
211	1y0q_A_C235_U236	AAA	AA00	77	0.24	AA00
212	1y0q_A_U236_A237	AAA	AA00	74	0.21	AA00
213	1y0q_A_A237_U238	AAA	AA00	9	0.31	AA00
214	1y0q_A_U238_C239	AAA	AA00	70	0.29	AA00
215	1y0q_A_C239_C240	AAA	AA00	79	0.24	AA00
216	1y0q_A_C240_G241	AAA	AA00	21	0.45	AA00
217	1y0q_A_G241_U242	NAN	NANT	0	0.73	AA08
218	1y0q_A_U242_A243	NAN	NANT	0	1.41	OP30
219	1y0q_A_A243_A244	AAw	AA01	39	0.39	AA01
220	1y0q_A_A244_C245	AAA	AA08	38	0.27	AA08
221	1y0q_A_C245_A246	NAN	NANT	0	0.89	ZZ01
222	1y0q_A_A246_U247	NAN	NANT	0	2.16	AA10
223	1y0q_A_U247_A248	AAA	AA09	23	0.36	AA09
224	1y0q_A_A248_A249	NAN	NANT	0	0.70	BA09
225	1y0q_A_A249_U250	AAA	AA08	9	0.45	AA08
226	1y0q_A_U250_U251	AAA	AA00	61	0.28	AA00
227	1y0q_A_U251_G252	NAN	NANT	0	1.85	OP31
228	1y0q_B_G1_C2	AAA	AA00	31	0.33	AA00
229	1y0q_B_C2_U3	AAA	AA00	76	0.26	AA00
230	1y0q_B_U3_U4	AAA	AA08	84	0.27	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 230 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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