Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1t0k_C_G6_A7 | AAA | AA00 | 64 | 0.21 |
| 02 | 1t0k_C_A7_C8 | AAA | AA00 | 67 | 0.21 |
| 03 | 1t0k_C_C8_C9 | AAA | AA00 | 52 | 0.28 |
| 04 | 1t0k_C_C9_G10 | AAA | AA04 | 64 | 0.41 |
| 05 | 1t0k_C_G10_G11 | NAN | NANT | 0 | 0.55 |
| 06 | 1t0k_C_G11_A12 | NAN | NANT | 0 | 0.62 |
| 07 | 1t0k_C_A12_G13 | NAN | NANT | 0 | 0.67 |
| 08 | 1t0k_C_G13_U14 | AAA | AA08 | 23 | 0.41 |
| 09 | 1t0k_C_U14_G15 | NAN | NANT | 0 | 0.56 |
| 10 | 1t0k_C_G15_U16 | NAN | NANT | 0 | 0.50 |
| 11 | 1t0k_C_U16_C17 | NAN | NANT | 0 | 0.34 |
| 12 | 1t0k_D_G50_A51 | AAw | AA01 | 10 | 0.38 |
| 13 | 1t0k_D_A51_C52 | NAN | NANT | 0 | 0.81 |
| 14 | 1t0k_D_C52_G53 | NAN | NANT | 0 | 0.55 |
| 15 | 1t0k_D_G53_C54 | NAN | NANT | 0 | 0.44 |
| 16 | 1t0k_D_C54_A55 | NAN | NANT | 0 | 0.51 |
| 17 | 1t0k_D_A55_G56 | NAN | NANT | 0 | 1.25 |
| 18 | 1t0k_D_G56_A57 | NAN | NANT | 0 | 1.66 |
| 19 | 1t0k_D_A57_G58 | NAN | NANT | 0 | 0.91 |
| 20 | 1t0k_D_G58_A59 | NAN | NANT | 0 | 0.57 |
| 21 | 1t0k_D_A59_U60 | AAw | AA11 | 40 | 0.26 |
| 22 | 1t0k_D_U60_G61 | NAN | NANT | 0 | 0.90 |
| 23 | 1t0k_D_G61_G62 | NAN | NANT | 0 | 0.38 |
| 24 | 1t0k_D_G62_U63 | NAN | NANT | 0 | 0.38 |
| 25 | 1t0k_D_U63_C64 | AAw | AA01 | 33 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|