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Conformers: ABBIImiBZICOPNSYNN
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THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION

Results of the assignment of 92 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011nuj_A_C18_G19AAAAA00770.21 AA00
021nuj_A_G19_G20AAAAA00940.15 AA00
031nuj_A_G20_A21AAAAA00860.16 AA00
041nuj_A_A21_C22AAAAA00840.28 AA00
051nuj_A_C22_C23AAAAA00590.38 AA00
061nuj_A_C23_G24NANNANT01.30 OP29
071nuj_A_G24_A25AAAAA08870.20 AA08
081nuj_A_A25_G.A26SYNAB2S830.22 AB2S
091nuj_A_A25_G.B26A-BAB01370.45 AB01
101nuj_A_G.A26_C27OPNOPS1490.36 OPS1
111nuj_A_G.B26_C27OPNOP12830.16 OP12
121nuj_A_C27_C28AAAAA00850.15 AA00
131nuj_A_C28_A29AAAAA00870.18 AA00
141nuj_A_A29_G30AAAAA00910.14 AA00
151nuj_B_G39_C40AAAAA00820.18 AA00
161nuj_B_C40_U41AAAAA00920.17 AA00
171nuj_B_U41_G42AAAAA00930.12 AA00
181nuj_B_G42_G43AAAAA00850.13 AA00
191nuj_B_G43_G44AAAAA00850.20 AA00
201nuj_B_G44_A45AAAAA00660.35 AA00
211nuj_B_A45_G46AAAAA00690.32 AA00
221nuj_B_G46_U47AAAAA00740.24 AA00
231nuj_B_U47_C48AAAAA00950.13 AA00
241nuj_B_C48_C49AAAAA00910.14 AA00
251nuj_C_C18_G19AAAAA00940.24 AA00
261nuj_C_G19_G20AAAAA00860.19 AA00
271nuj_C_G20_A21AAAAA00920.17 AA00
281nuj_C_A21_C22AAAAA00650.34 AA00
291nuj_C_C22_C23A-BAB05820.32 AB05
301nuj_C_C23_G24OPNOP13780.33 OP13
311nuj_C_G24_A25AAuAA07590.47 AA07
321nuj_C_A25_G26SYNAB2S850.17 AB2S
331nuj_C_G26_C27OPNOPS1800.23 OPS1
341nuj_C_C27_C28AAAAA00630.26 AA00
351nuj_C_C28_A29AAAAA00940.10 AA00
361nuj_C_A29_G30AAAAA00960.12 AA00
371nuj_D_G39_C40AAAAA00800.17 AA00
381nuj_D_C40_U41AAAAA00920.14 AA00
391nuj_D_U41_G42AAAAA00850.16 AA00
401nuj_D_G42_G43AAwAA01900.14 AA01
411nuj_D_G43_G44AAAAA00690.25 AA00
421nuj_D_G44_A45AAAAA00630.28 AA00
431nuj_D_A45_G46AAAAA00750.31 AA00
441nuj_D_G46_U47AAAAA00800.20 AA00
451nuj_D_U47_C48AAAAA00900.13 AA00
461nuj_D_C48_C49AAAAA00800.23 AA00
471nuj_E_C18_G19AAAAA00950.23 AA00
481nuj_E_G19_G20AAAAA00820.19 AA00
491nuj_E_G20_A21AAAAA00940.17 AA00
501nuj_E_A21_C22AAwAA01920.14 AA01
511nuj_E_C22_C23A-BAB05580.41 AB05
521nuj_E_C23_G24OPNOP13810.29 OP13
531nuj_E_G24_A25AAuAA07660.47 AA07
541nuj_E_A25_G26SYNAB2S880.18 AB2S
551nuj_E_G26_C27OPNOPS1760.24 OPS1
561nuj_E_C27_C28AAAAA00650.25 AA00
571nuj_E_C28_A29AAAAA00930.11 AA00
581nuj_E_A29_G30AAAAA00930.12 AA00
591nuj_F_G39_C40AAAAA00810.17 AA00
601nuj_F_C40_U41AAAAA00930.14 AA00
611nuj_F_U41_G42AAAAA00850.14 AA00
621nuj_F_G42_G43AAwAA01920.14 AA01
631nuj_F_G43_G44AAAAA00720.25 AA00
641nuj_F_G44_A45AAAAA00650.26 AA00
651nuj_F_A45_G46AAAAA00690.32 AA00
661nuj_F_G46_U47AAAAA00780.21 AA00
671nuj_F_U47_C48AAAAA00930.13 AA00
681nuj_F_C48_C49AAAAA00830.23 AA00
691nuj_G_C18_G19AAAAA00740.22 AA00
701nuj_G_G19_G20AAAAA00950.14 AA00
711nuj_G_G20_A21AAAAA00890.15 AA00
721nuj_G_A21_C22AAAAA00810.26 AA00
731nuj_G_C22_C23AAAAA00570.38 AA00
741nuj_G_C23_G24NANNANT01.30 OP29
751nuj_G_G24_A25AAAAA08900.19 AA08
761nuj_G_A25_G.A26SYNAB2S860.22 AB2S
771nuj_G_A25_G.B26A-BAB01440.43 AB01
781nuj_G_G.A26_C27OPNOPS1530.34 OPS1
791nuj_G_G.B26_C27OPNOP12850.17 OP12
801nuj_G_C27_C28AAAAA00860.15 AA00
811nuj_G_C28_A29AAAAA00930.17 AA00
821nuj_G_A29_G30AAAAA00880.14 AA00
831nuj_H_G39_C40AAAAA00840.16 AA00
841nuj_H_C40_U41AAAAA00930.17 AA00
851nuj_H_U41_G42AAAAA00940.11 AA00
861nuj_H_G42_G43AAAAA00820.14 AA00
871nuj_H_G43_G44AAAAA00810.20 AA00
881nuj_H_G44_A45AAAAA00630.34 AA00
891nuj_H_A45_G46AAAAA00710.33 AA00
901nuj_H_G46_U47AAAAA00780.21 AA00
911nuj_H_U47_C48AAAAA00930.13 AA00
921nuj_H_C48_C49AAAAA00920.15 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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