DNATCO v4.1: results

Transition State Stabilization by a Catalytic RNA

Results of the assignment of 220 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1m5v_A_G1_G2	AAw	AA01	49	0.23	AA01
002	1m5v_A_G2_C3	AAA	AA00	28	0.40	AA00
003	1m5v_A_C3_C4	AAA	AA00	29	0.32	AA00
004	1m5v_A_C4_A5	AAA	AA00	85	0.19	AA00
005	1m5v_A_A5_C6	AAA	AA00	86	0.16	AA00
006	1m5v_A_C6_C7	AAA	AA00	82	0.21	AA00
007	1m5v_A_C7_U8	AAA	AA00	93	0.11	AA00
008	1m5v_A_U8_G9	AAA	AA00	94	0.14	AA00
009	1m5v_A_G9_A10	AAA	AA00	84	0.19	AA00
010	1m5v_A_A10_C11	AAA	AA00	92	0.23	AA00
011	1m5v_A_C11_A2312	NAN	NANT	0	0.60	AA04
012	1m5v_M_G13_U14	OPN	OPS1	43	0.47	OPS1
013	1m5v_M_U14_C15	AAA	AA00	61	0.37	AA00
014	1m5v_M_C15_C16	AAA	AA00	83	0.21	AA00
015	1m5v_M_C16_U17	AAA	AA00	93	0.14	AA00
016	1m5v_M_U17_C18	AAA	AA00	91	0.17	AA00
017	1m5v_M_C18_U19	AAA	AA00	77	0.22	AA00
018	1m5v_M_U19_C20	AAA	AA00	78	0.20	AA00
019	1m5v_M_C20_C21	AAA	AA00	82	0.20	AA00
020	1m5v_B_G1_G2	AAA	AA00	11	0.35	AA00
021	1m5v_B_G2_A3	AAA	AA00	91	0.13	AA00
022	1m5v_B_A3_G4	AAw	AA01	83	0.23	AA01
023	1m5v_B_G4_A5	AAA	AA00	51	0.26	AA00
024	1m5v_B_A5_G6	AAA	AA00	89	0.13	AA00
025	1m5v_B_G6_A7	AAA	AA00	63	0.29	AA00
026	1m5v_B_A7_G8	AAw	AA06	63	0.47	AA06
027	1m5v_B_G8_A9	AAu	AA07	75	0.41	AA07
028	1m5v_B_A9_A10	AAA	AA08	86	0.20	AA08
029	1m5v_B_A10_G11	AAA	AA00	69	0.30	AA00
030	1m5v_B_G11_U12	AAA	AA00	93	0.17	AA00
031	1m5v_B_U12_C13	AAA	AA00	89	0.21	AA00
032	1m5v_B_C13_A14	A-B	AB04	32	0.43	AB04
033	1m5v_B_A14_A15	NAN	NANT	0	1.63	OP17
034	1m5v_B_A15_C16	NAN	NANT	0	0.42	AA08
035	1m5v_B_C16_C17	AAA	AA00	54	0.30	AA00
036	1m5v_B_C17_A18	AAA	AA00	88	0.19	AA00
037	1m5v_B_A18_G19	AAA	AA00	87	0.16	AA00
038	1m5v_B_G19_A20	AAw	AA06	76	0.33	AA06
039	1m5v_B_A20_G21	AAA	AA08	43	0.36	AA08
040	1m5v_B_G21_A22	NAN	NANT	0	0.49	OP08
041	1m5v_B_A22_A23	AAA	AA08	78	0.32	AA08
042	1m5v_B_A23_A24	AAA	AA00	69	0.28	AA00
043	1m5v_B_A24_C25	AAA	AA00	76	0.26	AA00
044	1m5v_B_C25_A26	AAA	AA00	87	0.15	AA00
045	1m5v_B_A26_C27	AAA	AA00	87	0.19	AA00
046	1m5v_B_C27_A28	AAA	AA00	82	0.15	AA00
047	1m5v_B_A28_C29	AAA	AA00	95	0.13	AA00
048	1m5v_B_C29_C30	AAA	AA00	94	0.14	AA00
049	1m5v_B_C30_A31	AAA	AA00	78	0.19	AA00
050	1m5v_B_A31_A32	AAA	AA00	60	0.17	AA00
051	1m5v_B_A32_C33	AAw	AA01	71	0.29	AA01
052	1m5v_B_C33_C34	AAA	AA08	75	0.18	AA08
053	1m5v_B_C34_C35	AAA	AA00	85	0.16	AA00
054	1m5v_B_C35_A36	AAA	AA00	87	0.23	AA00
055	1m5v_B_A36_U37	AAA	AA00	94	0.20	AA00
056	1m5v_B_U37_U38	ICL	IC02	90	0.04	IC02
057	1m5v_B_U38_G39	ZZZ	ZZ02	75	0.53	ZZ02
058	1m5v_B_G39_C40	NAN	NANT	0	0.72	IC02
059	1m5v_B_C40_A41	NAN	NANT	0	0.69	OP15
060	1m5v_B_A41_C42	AAA	AA00	84	0.14	AA00
061	1m5v_B_C42_U43	NAN	NANT	0	0.91	OP30
062	1m5v_B_U43_C44	NAN	NANT	0	1.21	IC03
063	1m5v_B_C44_C45	AAA	AA04	26	0.66	AA04
064	1m5v_B_C45_G46	NAN	NANT	0	1.47	OP17
065	1m5v_B_G46_G47	AAA	AA00	83	0.13	AA00
066	1m5v_B_G47_G48	AAA	AA00	88	0.20	AA00
067	1m5v_B_G48_U49	AAA	AA00	86	0.16	AA00
068	1m5v_B_U49_U50	AAw	AA01	60	0.29	AA01
069	1m5v_B_U50_G51	AAA	AA08	95	0.16	AA08
070	1m5v_B_G51_G52	AAA	AA00	65	0.20	AA00
071	1m5v_B_G52_U53	AAA	AA00	95	0.10	AA00
072	1m5v_B_U53_G54	AAA	AA00	94	0.18	AA00
073	1m5v_B_G54_G55	A-B	AB05	71	0.33	AB05
074	1m5v_B_G55_U56	NAN	NANT	0	0.52	OP13
075	1m5v_B_U56_A57	NAN	NANT	0	0.90	OP21
076	1m5v_B_A57_U58	NAN	NANT	0	0.67	OP21
077	1m5v_B_U58_A59	OPN	OP11	71	0.17	OP11
078	1m5v_B_A59_U60	A-B	AB04	23	0.52	AB04
079	1m5v_B_U60_U61	NAN	NANT	0	0.95	OP04
080	1m5v_B_U61_A62	NAN	NANT	0	1.43	OP15
081	1m5v_B_A62_C63	NAN	NANT	0	0.63	AA04
082	1m5v_B_C63_C64	AAA	AA00	83	0.29	AA00
083	1m5v_B_C64_U65	AAA	AA00	86	0.13	AA00
084	1m5v_B_U65_G66	AAw	AA01	93	0.19	AA01
085	1m5v_B_G66_G67	AAw	AA11	73	0.27	AA11
086	1m5v_B_G67_U68	AAA	AA00	16	0.38	AA00
087	1m5v_B_U68_A69	AAA	AA00	89	0.14	AA00
088	1m5v_B_A69_C70	AAw	AA01	81	0.24	AA01
089	1m5v_B_C70_G71	AAA	AA08	72	0.25	AA08
090	1m5v_B_G71_G72	AAu	AA12	47	0.42	AA12
091	1m5v_B_G72_G73	NAN	NANT	0	0.69	BB2S
092	1m5v_B_G73_G74	SYN	AAS1	28	0.27	AAS1
093	1m5v_B_G74_G75	AAA	AA00	76	0.31	AA00
094	1m5v_B_G75_A76	NAN	NANT	0	2.31	IC01
095	1m5v_B_A76_A77	SYN	AAS1	15	0.45	AAS1
096	1m5v_B_A77_A78	AAA	AA00	86	0.14	AA00
097	1m5v_B_A78_C79	NAN	NANT	0	0.91	AA08
098	1m5v_B_C79_U80	AAA	AA00	77	0.20	AA00
099	1m5v_B_U80_U81	AAw	AA06	87	0.16	AA06
100	1m5v_B_U81_C82	AAw	AA01	7	0.55	AA01
101	1m5v_B_C82_G83	AAA	AA00	37	0.37	AA00
102	1m5v_B_G83_U84	AAw	AA01	45	0.29	AA01
103	1m5v_B_U84_G85	NAN	NANT	0	1.47	OP17
104	1m5v_B_G85_G86	AAA	AA08	27	0.35	AA08
105	1m5v_B_G86_U87	AAA	AA00	60	0.25	AA00
106	1m5v_B_U87_G88	AAA	AA00	70	0.19	AA00
107	1m5v_B_G88_G89	AAA	AA00	81	0.20	AA00
108	1m5v_B_G89_C90	AAA	AA00	84	0.22	AA00
109	1m5v_B_C90_C91	AAw	AA01	78	0.23	AA01
110	1m5v_B_C91_G92	NAN	NANT	0	1.56	OP17
111	1m5v_D_G1_G2	AAw	AA01	21	0.46	AA01
112	1m5v_D_G2_C3	AAA	AA08	51	0.33	AA08
113	1m5v_D_C3_C4	AAA	AA00	60	0.31	AA00
114	1m5v_D_C4_A5	AAA	AA00	87	0.14	AA00
115	1m5v_D_A5_C6	AAA	AA00	91	0.12	AA00
116	1m5v_D_C6_C7	AAA	AA00	79	0.31	AA00
117	1m5v_D_C7_U8	AAA	AA00	91	0.18	AA00
118	1m5v_D_U8_G9	AAA	AA00	85	0.19	AA00
119	1m5v_D_G9_A10	AAA	AA00	64	0.24	AA00
120	1m5v_D_A10_C11	AAA	AA00	84	0.28	AA00
121	1m5v_D_C11_A2312	NAN	NANT	0	0.51	AB05
122	1m5v_P_G13_U14	NAN	NANT	0	0.39	OPS1
123	1m5v_P_U14_C15	AAA	AA00	44	0.47	AA00
124	1m5v_P_C15_C16	AAw	AA06	84	0.28	AA06
125	1m5v_P_C16_U17	AAA	AA08	76	0.28	AA08
126	1m5v_P_U17_C18	AAA	AA00	65	0.24	AA00
127	1m5v_P_C18_U19	AAA	AA00	87	0.19	AA00
128	1m5v_P_U19_C20	AAA	AA00	94	0.11	AA00
129	1m5v_P_C20_C21	AAA	AA00	83	0.20	AA00
130	1m5v_E_G1_G2	AAA	AA00	15	0.40	AA00
131	1m5v_E_G2_A3	AAA	AA00	79	0.15	AA00
132	1m5v_E_A3_G4	AAA	AA00	85	0.16	AA00
133	1m5v_E_G4_A5	AAA	AA00	89	0.16	AA00
134	1m5v_E_A5_G6	AAA	AA00	94	0.11	AA00
135	1m5v_E_G6_A7	AAA	AA00	79	0.22	AA00
136	1m5v_E_A7_G8	AAA	AA08	58	0.43	AA08
137	1m5v_E_G8_A9	AAu	AA12	87	0.31	AA12
138	1m5v_E_A9_A10	AAA	AA00	86	0.22	AA00
139	1m5v_E_A10_G11	AAA	AA00	76	0.29	AA00
140	1m5v_E_G11_U12	AAA	AA00	94	0.14	AA00
141	1m5v_E_U12_C13	AAA	AA00	92	0.17	AA00
142	1m5v_E_C13_A14	A-B	AB04	33	0.49	AB04
143	1m5v_E_A14_A15	NAN	NANT	0	2.46	OP01
144	1m5v_E_A15_C16	AAA	AA00	70	0.30	AA00
145	1m5v_E_C16_C17	AAA	AA00	84	0.20	AA00
146	1m5v_E_C17_A18	AAA	AA00	83	0.16	AA00
147	1m5v_E_A18_G19	AAA	AA00	85	0.17	AA00
148	1m5v_E_G19_A20	AAA	AA00	76	0.27	AA00
149	1m5v_E_A20_G21	AAA	AA00	63	0.35	AA00
150	1m5v_E_G21_A22	NAN	NANT	0	0.48	OP08
151	1m5v_E_A22_A23	AAA	AA08	72	0.31	AA08
152	1m5v_E_A23_A24	AAA	AA00	83	0.21	AA00
153	1m5v_E_A24_C25	AAA	AA00	70	0.34	AA00
154	1m5v_E_C25_A26	AAw	AA01	64	0.28	AA01
155	1m5v_E_A26_C27	AAA	AA08	91	0.25	AA08
156	1m5v_E_C27_A28	AAA	AA00	76	0.19	AA00
157	1m5v_E_A28_C29	AAA	AA00	78	0.20	AA00
158	1m5v_E_C29_C30	AAA	AA00	93	0.15	AA00
159	1m5v_E_C30_A31	AAA	AA00	87	0.14	AA00
160	1m5v_E_A31_A32	AAA	AA00	86	0.15	AA00
161	1m5v_E_A32_C33	AAA	AA00	90	0.13	AA00
162	1m5v_E_C33_C34	AAA	AA00	75	0.12	AA00
163	1m5v_E_C34_C35	AAA	AA00	92	0.16	AA00
164	1m5v_E_C35_A36	AAA	AA00	87	0.25	AA00
165	1m5v_E_A36_U37	AAA	AA00	87	0.21	AA00
166	1m5v_E_U37_U38	ICL	IC02	91	0.09	IC02
167	1m5v_E_U38_G39	ZZZ	ZZ02	74	0.54	ZZ02
168	1m5v_E_G39_C40	NAN	NANT	0	0.68	IC02
169	1m5v_E_C40_A41	NAN	NANT	0	0.71	OP15
170	1m5v_E_A41_C42	AAA	AA00	90	0.15	AA00
171	1m5v_E_C42_U43	NAN	NANT	0	1.88	OP24
172	1m5v_E_U43_C44	NAN	NANT	0	1.10	OP04
173	1m5v_E_C44_C45	AAA	AA00	40	0.44	AA00
174	1m5v_E_C45_G46	NAN	NANT	0	1.44	OP17
175	1m5v_E_G46_G47	AAA	AA00	79	0.15	AA00
176	1m5v_E_G47_G48	AAA	AA00	89	0.18	AA00
177	1m5v_E_G48_U49	AAA	AA00	95	0.12	AA00
178	1m5v_E_U49_U50	AAA	AA00	93	0.14	AA00
179	1m5v_E_U50_G51	AAA	AA00	95	0.11	AA00
180	1m5v_E_G51_G52	AAA	AA00	98	0.12	AA00
181	1m5v_E_G52_U53	AAA	AA00	99	0.08	AA00
182	1m5v_E_U53_G54	AAA	AA00	95	0.20	AA00
183	1m5v_E_G54_G55	A-B	AB01	48	0.26	AB01
184	1m5v_E_G55_U56	NAN	NANT	0	0.52	OP13
185	1m5v_E_U56_A57	NAN	NANT	0	1.60	OP05
186	1m5v_E_A57_U58	NAN	NANT	0	1.66	OP09
187	1m5v_E_U58_A59	OPN	OP11	73	0.17	OP11
188	1m5v_E_A59_U60	A-B	AB01	9	0.53	AB01
189	1m5v_E_U60_U61	NAN	NANT	0	1.52	AB04
190	1m5v_E_U61_A62	NAN	NANT	0	0.76	AA12
191	1m5v_E_A62_C63	AAA	AA04	38	0.60	AA04
192	1m5v_E_C63_C64	AAA	AA00	95	0.17	AA00
193	1m5v_E_C64_U65	AAA	AA00	88	0.12	AA00
194	1m5v_E_U65_G66	AAA	AA00	64	0.23	AA00
195	1m5v_E_G66_G67	AAw	AA01	85	0.14	AA01
196	1m5v_E_G67_U68	A-B	AB04	44	0.35	AB04
197	1m5v_E_U68_A69	NAN	NANT	0	0.47	AA02
198	1m5v_E_A69_C70	AAw	AA01	71	0.26	AA01
199	1m5v_E_C70_G71	AAw	AA11	91	0.33	AA11
200	1m5v_E_G71_G72	NAN	NANT	0	0.67	AA01
201	1m5v_E_G72_G73	AAA	AA08	85	0.31	AA08
202	1m5v_E_G73_G74	AAA	AA00	25	0.23	AA00
203	1m5v_E_G74_G75	NAN	NANT	0	0.81	IC03
204	1m5v_E_G75_A76	OPN	OP04	66	0.24	OP04
205	1m5v_E_A76_A77	AAA	AA00	49	0.36	AA00
206	1m5v_E_A77_A78	AAA	AA00	72	0.20	AA00
207	1m5v_E_A78_C79	NAN	NANT	0	1.27	AA10
208	1m5v_E_C79_U80	AAA	AA00	70	0.23	AA00
209	1m5v_E_U80_U81	AAA	AA00	67	0.27	AA00
210	1m5v_E_U81_C82	AAA	AA00	94	0.13	AA00
211	1m5v_E_C82_G83	AAA	AA00	93	0.20	AA00
212	1m5v_E_G83_U84	AAA	AA08	53	0.35	AA08
213	1m5v_E_U84_G85	NAN	NANT	0	0.80	OP30
214	1m5v_E_G85_G86	AAw	AA01	34	0.45	AA01
215	1m5v_E_G86_U87	AAw	AA11	31	0.50	AA11
216	1m5v_E_U87_G88	AAA	AA00	70	0.28	AA00
217	1m5v_E_G88_G89	AAA	AA00	92	0.16	AA00
218	1m5v_E_G89_C90	AAw	AA06	73	0.26	AA06
219	1m5v_E_C90_C91	NAN	NANT	0	1.06	AA11
220	1m5v_E_C91_G92	AAw	AA01	80	0.18	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 220 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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