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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION)

Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011zqe_T_DC1_DA2NANNANT00.62BB00
021zqe_T_DA2_DT3BBBBB00600.27BB00
031zqe_T_DT3_DT4BBBBB00160.35BB00
041zqe_T_DT4_DA5BBBBB00270.29BB00
051zqe_T_DA5_DG6BBBBB00850.25BB00
061zqe_T_DG6_DA7BB2BB0790.34BB07
071zqe_P_DT1_DC2A-BAB03600.26AB03
081zqe_P_DC2_DT3BBBBB01790.20BB01
091zqe_P_DT3_DA4BBBBB01430.25BB01
101zqe_P_DA4_DA5B-ABA05190.26BA05
111zqe_P_DA5_DT6NANNANT00.35BB02
121zqe_P_DT6_DG7NANNANT00.68BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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