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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Coupling of active site motions and RNA binding

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011zl3_B_G401_G402SYNAAS170.75AAS1
021zl3_B_G402_C403AAAAA00900.13AA00
031zl3_B_C403_A404AAAAA00880.13AA00
041zl3_B_A404_A405AAAAA00840.14AA00
051zl3_B_A405_C406AAAAA00810.23AA00
061zl3_B_C406_G407AAAAA08590.23AA08
071zl3_B_G407_G408AAAAA00760.33AA00
081zl3_B_G408_U409A-BAB05300.22AB05
091zl3_B_U409_UD5410NANNANT00.83OP17
101zl3_B_UD5410_C411NANNANT00.98IC01
111zl3_B_C411_G412NANNANT00.59BB2S
121zl3_B_G412_A413NANNANT00.98OP31
131zl3_B_A413_U414NANNANT01.39OP29
141zl3_B_U414_C415NANNANT00.40AB04
151zl3_B_C415_C416OPNOP12550.22OP12
161zl3_B_C416_C417AAAAA00800.14AA00
171zl3_B_C417_G418AAAAA08840.16AA08
181zl3_B_G418_U419AAAAA00830.18AA00
191zl3_B_U419_U420AAAAA00870.17AA00
201zl3_B_U420_G421AAAAA00900.12AA00
211zl3_B_G421_C422AAAAA00800.16AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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