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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011zdi_R_A3_U4AAAAA00900.13AA00
021zdi_R_U4_G5AAAAA00740.19AA00
031zdi_R_G5_A6NANNANT00.95OP29
041zdi_R_A6_G7NANNANT00.81OP31
051zdi_R_G7_G8AAAAA08560.23AA08
061zdi_R_G8_A9AAAAA00600.24AA00
071zdi_R_A9_U10OPNOP09320.32OP09
081zdi_R_U10_U11NANNANT00.37OP20
091zdi_R_U11_A12NANNANT01.40OP22
101zdi_R_A12_C13NANNANT00.53OP27
111zdi_R_C13_C14AAAAA00860.19AA00
121zdi_R_C14_C15AAAAA00780.24AA00
131zdi_R_C15_A16AAAAA08960.16AA08
141zdi_R_A16_U17AAAAA08810.24AA08
151zdi_R_U17_G18AAAAA03510.34AA03
161zdi_S_U4_G5AAAAA00740.25AA00
171zdi_S_G5_A6NANNANT00.89OP29
181zdi_S_A6_G7NANNANT00.81OP31
191zdi_S_G7_G8AAAAA08150.36AA08
201zdi_S_G8_A9AAAAA00330.36AA00
211zdi_S_A9_U10OPNOP09440.29OP09
221zdi_S_U10_U11NANNANT00.38OP20
231zdi_S_U11_A12NANNANT01.50OP22
241zdi_S_A12_C13NANNANT00.52OP27
251zdi_S_C13_C14AAAAA00550.28AA00
261zdi_S_C14_C15AAAAA00470.30AA00
271zdi_S_C15_A16AAAAA00350.13AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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