DNATCO v3.2: results

Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts	model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	1zdi_R_A3_U4	AAA	AA00	90	0.13	AA00
02	1zdi_R_U4_G5	AAA	AA00	74	0.19	AA00
03	1zdi_R_G5_A6	NAN	NANT	0	0.95	OP29
04	1zdi_R_A6_G7	NAN	NANT	0	0.81	OP31
05	1zdi_R_G7_G8	AAA	AA08	56	0.23	AA08
06	1zdi_R_G8_A9	AAA	AA00	60	0.24	AA00
07	1zdi_R_A9_U10	OPN	OP09	32	0.32	OP09
08	1zdi_R_U10_U11	NAN	NANT	0	0.37	OP20
09	1zdi_R_U11_A12	NAN	NANT	0	1.40	OP22
10	1zdi_R_A12_C13	NAN	NANT	0	0.53	OP27
11	1zdi_R_C13_C14	AAA	AA00	86	0.19	AA00
12	1zdi_R_C14_C15	AAA	AA00	78	0.24	AA00
13	1zdi_R_C15_A16	AAA	AA08	96	0.16	AA08
14	1zdi_R_A16_U17	AAA	AA08	81	0.24	AA08
15	1zdi_R_U17_G18	AAA	AA03	51	0.34	AA03
16	1zdi_S_U4_G5	AAA	AA00	74	0.25	AA00
17	1zdi_S_G5_A6	NAN	NANT	0	0.89	OP29
18	1zdi_S_A6_G7	NAN	NANT	0	0.81	OP31
19	1zdi_S_G7_G8	AAA	AA08	15	0.36	AA08
20	1zdi_S_G8_A9	AAA	AA00	33	0.36	AA00
21	1zdi_S_A9_U10	OPN	OP09	44	0.29	OP09
22	1zdi_S_U10_U11	NAN	NANT	0	0.38	OP20
23	1zdi_S_U11_A12	NAN	NANT	0	1.50	OP22
24	1zdi_S_A12_C13	NAN	NANT	0	0.52	OP27
25	1zdi_S_C13_C14	AAA	AA00	55	0.28	AA00
26	1zdi_S_C14_C15	AAA	AA00	47	0.30	AA00
27	1zdi_S_C15_A16	AAA	AA00	35	0.13	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Color by conformation group (pyramids)

Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N