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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011zbh_F_G6_G7AAAAA00590.25AA00
021zbh_F_G7_C8AAwAA06690.31AA06
031zbh_F_C8_U9AAAAA03210.21AA03
041zbh_F_U9_C10AAAAA00840.19AA00
051zbh_F_C10_U11AAAAA00910.21AA00
061zbh_F_U11_U12NANNANT00.95OP29
071zbh_F_U12_U13NANNANT01.84OP09
081zbh_F_U13_U14OPNOP20480.50OP20
091zbh_F_U14_C15NANNANT02.03OP06
101zbh_F_C15_A16OPNOP11440.51OP11
111zbh_F_A16_G17AAAAA08870.24AA08
121zbh_F_G17_A18AAAAA08630.22AA08
131zbh_F_A18_G19AAwAA01720.18AA01
141zbh_F_G19_C20AAAAA00650.18AA00
151zbh_F_C20_C21NANNANT00.32AB05
161zbh_E_G6_G7NANNANT00.54AA04
171zbh_E_G7_C8AAwAA06750.34AA06
181zbh_E_C8_U9NANNANT00.36AA03
191zbh_E_U9_C10NANNANT00.31AA06
201zbh_E_C10_U11AAAAA00840.19AA00
211zbh_E_U11_U12NANNANT00.89OP29
221zbh_E_U12_U13NANNANT00.73OP29
231zbh_E_U13_U14OPNOP20400.46OP20
241zbh_E_U14_C15NANNANT02.01OP06
251zbh_E_C15_A16OPNOP11480.54OP11
261zbh_E_A16_G17AAAAA00690.22AA00
271zbh_E_G17_A18AAAAA00860.13AA00
281zbh_E_A18_G19AAwAA06420.32AA06
291zbh_E_G19_C20AAAAA00710.19AA00
301zbh_E_C20_C21A-BAB05160.32AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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