DNATCO v3.2: results

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	1y3o_A_C1_U2	AAA	AA08	89	0.18	AA08
02	1y3o_A_U2_5BU3	AAA	AA00	77	0.22	AA00
03	1y3o_A_5BU3_G4	AAA	AA00	96	0.14	AA00
04	1y3o_A_G4_C5	AAA	AA00	88	0.13	AA00
05	1y3o_A_C5_U6	AAA	AA00	90	0.19	AA00
06	1y3o_A_U6_G7	A-B	AB05	85	0.20	AB05
07	1y3o_A_G7_A8	OPN	OP13	59	0.44	OP13
08	1y3o_A_A8_A9	A-B	AB05	50	0.25	AB05
09	1y3o_A_A9_G10	NAN	NANT	0	0.60	OP21
10	1y3o_A_G10_U11	AAA	AA00	65	0.15	AA00
11	1y3o_A_U11_G12	AAA	AA00	82	0.17	AA00
12	1y3o_A_G12_C13	AAA	AA00	82	0.13	AA00
13	1y3o_A_C13_A14	AAA	AA00	92	0.12	AA00
14	1y3o_A_A14_C15	AAA	AA00	86	0.16	AA00
15	1y3o_A_C15_A16	AAA	AA00	91	0.25	AA00
16	1y3o_A_A16_C17	AAA	AA00	84	0.20	AA00
17	1y3o_A_C17_A18	AAA	AA00	89	0.15	AA00
18	1y3o_A_A18_G19	AAA	AA00	95	0.09	AA00
19	1y3o_A_G19_C20	AAA	AA00	89	0.09	AA00
20	1y3o_A_C20_A21	AAw	AA01	76	0.22	AA01
21	1y3o_A_A21_A22	AAA	AA08	70	0.25	AA08
22	1y3o_A_A22_G23	AAA	AA00	73	0.19	AA00
23	1y3o_B_C1_U2	AAA	AA08	89	0.18	AA08
24	1y3o_B_U2_5BU3	AAA	AA00	93	0.15	AA00
25	1y3o_B_5BU3_G4	AAA	AA00	82	0.10	AA00
26	1y3o_B_G4_C5	AAA	AA00	93	0.09	AA00
27	1y3o_B_C5_U6	AAA	AA00	79	0.21	AA00
28	1y3o_B_U6_G7	A-B	AB05	91	0.20	AB05
29	1y3o_B_G7_A8	NAN	NANT	0	0.72	OP17
30	1y3o_B_A8_A9	A-B	AB05	53	0.39	AB05
31	1y3o_B_A9_G10	NAN	NANT	0	0.65	OP21
32	1y3o_B_G10_U11	AAA	AA00	88	0.10	AA00
33	1y3o_B_U11_G12	AAA	AA00	94	0.17	AA00
34	1y3o_B_G12_C13	AAA	AA00	90	0.15	AA00
35	1y3o_B_C13_A14	AAA	AA00	82	0.18	AA00
36	1y3o_B_A14_C15	AAA	AA00	90	0.14	AA00
37	1y3o_B_C15_A16	AAA	AA00	89	0.30	AA00
38	1y3o_B_A16_C17	AAA	AA00	75	0.24	AA00
39	1y3o_B_C17_A18	AAA	AA00	96	0.14	AA00
40	1y3o_B_A18_G19	AAA	AA00	75	0.15	AA00
41	1y3o_B_G19_C20	AAA	AA00	87	0.12	AA00
42	1y3o_B_C20_A21	AAA	AA00	95	0.10	AA00
43	1y3o_B_A21_A22	AAA	AA00	92	0.22	AA00
44	1y3o_B_A22_G23	AAA	AA00	87	0.16	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Color by conformation group (pyramids)

Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N

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