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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

HIV-1 DIS RNA subtype F- Mn soaked

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011y3o_A_C1_U2AAAAA08890.18AA08
021y3o_A_U2_5BU3AAAAA00770.22AA00
031y3o_A_5BU3_G4AAAAA00960.14AA00
041y3o_A_G4_C5AAAAA00880.13AA00
051y3o_A_C5_U6AAAAA00900.19AA00
061y3o_A_U6_G7A-BAB05850.20AB05
071y3o_A_G7_A8OPNOP13590.44OP13
081y3o_A_A8_A9A-BAB05500.25AB05
091y3o_A_A9_G10NANNANT00.60OP21
101y3o_A_G10_U11AAAAA00650.15AA00
111y3o_A_U11_G12AAAAA00820.17AA00
121y3o_A_G12_C13AAAAA00820.13AA00
131y3o_A_C13_A14AAAAA00920.12AA00
141y3o_A_A14_C15AAAAA00860.16AA00
151y3o_A_C15_A16AAAAA00910.25AA00
161y3o_A_A16_C17AAAAA00840.20AA00
171y3o_A_C17_A18AAAAA00890.15AA00
181y3o_A_A18_G19AAAAA00950.09AA00
191y3o_A_G19_C20AAAAA00890.09AA00
201y3o_A_C20_A21AAwAA01760.22AA01
211y3o_A_A21_A22AAAAA08700.25AA08
221y3o_A_A22_G23AAAAA00730.19AA00
231y3o_B_C1_U2AAAAA08890.18AA08
241y3o_B_U2_5BU3AAAAA00930.15AA00
251y3o_B_5BU3_G4AAAAA00820.10AA00
261y3o_B_G4_C5AAAAA00930.09AA00
271y3o_B_C5_U6AAAAA00790.21AA00
281y3o_B_U6_G7A-BAB05910.20AB05
291y3o_B_G7_A8NANNANT00.72OP17
301y3o_B_A8_A9A-BAB05530.39AB05
311y3o_B_A9_G10NANNANT00.65OP21
321y3o_B_G10_U11AAAAA00880.10AA00
331y3o_B_U11_G12AAAAA00940.17AA00
341y3o_B_G12_C13AAAAA00900.15AA00
351y3o_B_C13_A14AAAAA00820.18AA00
361y3o_B_A14_C15AAAAA00900.14AA00
371y3o_B_C15_A16AAAAA00890.30AA00
381y3o_B_A16_C17AAAAA00750.24AA00
391y3o_B_C17_A18AAAAA00960.14AA00
401y3o_B_A18_G19AAAAA00750.15AA00
411y3o_B_G19_C20AAAAA00870.12AA00
421y3o_B_C20_A21AAAAA00950.10AA00
431y3o_B_A21_A22AAAAA00920.22AA00
441y3o_B_A22_G23AAAAA00870.16AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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