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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Solution structure of ACAUAGA loop

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011xwu_A_C1_G2AAwAA01580.49AA01
021xwu_A_G2_A3AAAAA00750.25AA00
031xwu_A_A3_A4AAAAA00810.13AA00
041xwu_A_A4_A5AAwAA01800.33AA01
051xwu_A_A5_C6AAAAA00670.32AA00
061xwu_A_C6_A7NANNANT00.58AA05
071xwu_A_A7_U8NANNANT00.92OP22
081xwu_A_U8_A9NANNANT01.30OP24
091xwu_A_A9_G10NANNANT00.87BB03
101xwu_A_G10_A11miBBB12330.50BB12
111xwu_A_A11_U12B-ABA0180.48BA01
121xwu_A_U12_U13AAAAA00250.41AA00
131xwu_A_U13_C14AAAAA00570.21AA00
141xwu_A_C14_G15NANNANT00.50AB04
151xwu_A_G15_A16NANNANT00.94AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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