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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Solution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine.

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011xst_A_G1_G2AAAAA00350.27AA00
021xst_A_G2_A3AAAAA08320.39AA08
031xst_A_A3_A4AAAAA08270.31AA08
041xst_A_A4_G5AAAAA00610.28AA00
051xst_A_G5_A6NANNANT00.85AA03
061xst_A_A6_C7NANNANT00.66AA10
071xst_A_C7_C8AAuAA12270.42AA12
081xst_A_C8_G9AAAAA00470.32AA00
091xst_A_G9_G10AAAAA00510.41AA00
101xst_A_G10_U11AAuAA12250.24AA12
111xst_A_U11_C12AAAAA00610.29AA00
121xst_A_C12_U13AAAAA08140.52AA08
131xst_A_U13_U14NANNANT02.04OP11
141xst_A_U14_C15NANNANT00.63OP11
151xst_A_C15_G16NANNANT00.58ZZ1S
161xst_A_G16_G17NANNANT00.68AAS1
171xst_A_G17_A18AAAAA00510.28AA00
181xst_A_A18_C19AAAAA08320.45AA08
191xst_A_C19_C20AAAAA00250.39AA00
201xst_A_C20_G21AAAAA00610.34AA00
211xst_A_G21_G22AAAAA00360.35AA00
221xst_A_G22_C23AAAAA04790.37AA04
231xst_A_C23_U24AAAAA00500.23AA00
241xst_A_U24_U25AAAAA00390.31AA00
251xst_A_U25_C26AAAAA00770.26AA00
261xst_A_C26_C27AAAAA04700.37AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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