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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

HELIX 45 (16S RRNA) FROM B. STEAROTHERMOPHILUS, NMR, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011wts_A_G1_G2AAAAA00720.29AA00
021wts_A_G2_A3AAAAA00170.33AA00
031wts_A_A3_C4AAAAA00250.29AA00
041wts_A_C4_C5AAAAA00550.28AA00
051wts_A_C5_2MG6AAAAA00690.22AA00
061wts_A_2MG6_G7NANNANT01.58OP08
071wts_A_G7_MA68NANNANT01.41OP23
081wts_A_MA68_MA69NANNANT00.97BB00
091wts_A_MA69_G10NANNANT01.28ZZ02
101wts_A_G10_G11AAAAA00490.15AA00
111wts_A_G11_U12AAAAA00560.30AA00
121wts_A_U12_C13AAAAA00580.39AA00
131wts_A_C13_C14AAAAA00430.49AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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