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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Complex structure of the C-terminal RNA-binding domain of hnRNP D (AUF1) with telomere DNA

Results of the assignment of 60 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011wtb-m10_B_DT2_DA3NANNANT00.89IC03
021wtb-m11_B_DT2_DA3NANNANT01.40IC04
031wtb-m12_B_DT2_DA3NANNANT01.30IC04
041wtb-m13_B_DT2_DA3NANNANT00.86IC06
051wtb-m14_B_DT2_DA3NANNANT00.77IC03
061wtb-m15_B_DT2_DA3NANNANT01.88OP22
071wtb-m16_B_DT2_DA3NANNANT02.20OP27
081wtb-m17_B_DT2_DA3NANNANT00.87IC06
091wtb-m18_B_DT2_DA3NANNANT00.81IC06
101wtb-m19_B_DT2_DA3NANNANT00.65OPS1
111wtb-m1_B_DT2_DA3NANNANT00.80IC03
121wtb-m20_B_DT2_DA3NANNANT00.85IC03
131wtb-m2_B_DT2_DA3NANNANT00.76IC02
141wtb-m3_B_DT2_DA3NANNANT01.86OP22
151wtb-m4_B_DT2_DA3NANNANT01.13IC02
161wtb-m5_B_DT2_DA3NANNANT00.88IC06
171wtb-m6_B_DT2_DA3NANNANT00.70IC02
181wtb-m7_B_DT2_DA3NANNANT00.67IC02
191wtb-m8_B_DT2_DA3NANNANT01.48OP07
201wtb-m9_B_DT2_DA3NANNANT00.87IC03
211wtb-m10_B_DA3_DG4NANNANT01.54BB2S
221wtb-m11_B_DA3_DG4NANNANT01.64OP1S
231wtb-m12_B_DA3_DG4NANNANT00.96IC05
241wtb-m13_B_DA3_DG4NANNANT01.49OP1S
251wtb-m14_B_DA3_DG4NANNANT01.01IC05
261wtb-m15_B_DA3_DG4NANNANT01.62OP1S
271wtb-m16_B_DA3_DG4NANNANT01.54OP1S
281wtb-m17_B_DA3_DG4NANNANT01.50OP1S
291wtb-m18_B_DA3_DG4NANNANT01.53OP1S
301wtb-m19_B_DA3_DG4NANNANT01.39BB2S
311wtb-m1_B_DA3_DG4NANNANT01.54OP1S
321wtb-m20_B_DA3_DG4NANNANT01.50OP1S
331wtb-m2_B_DA3_DG4NANNANT01.60OP1S
341wtb-m3_B_DA3_DG4NANNANT01.54OP1S
351wtb-m4_B_DA3_DG4NANNANT01.50BB2S
361wtb-m5_B_DA3_DG4NANNANT01.51OP1S
371wtb-m6_B_DA3_DG4NANNANT01.57OP1S
381wtb-m7_B_DA3_DG4NANNANT01.56OP1S
391wtb-m8_B_DA3_DG4NANNANT01.52BB2S
401wtb-m9_B_DA3_DG4NANNANT01.16IC05
411wtb-m10_B_DG4_DG5NANNANT00.80ZZS2
421wtb-m11_B_DG4_DG5NANNANT00.77ZZS2
431wtb-m12_B_DG4_DG5NANNANT01.27BBS1
441wtb-m13_B_DG4_DG5NANNANT00.74BBS1
451wtb-m14_B_DG4_DG5NANNANT01.34BBS1
461wtb-m15_B_DG4_DG5NANNANT01.20BBS1
471wtb-m16_B_DG4_DG5NANNANT00.90BBS1
481wtb-m17_B_DG4_DG5NANNANT01.22BBS1
491wtb-m18_B_DG4_DG5NANNANT01.13BBS1
501wtb-m19_B_DG4_DG5NANNANT01.25BBS1
511wtb-m1_B_DG4_DG5NANNANT01.13BBS1
521wtb-m20_B_DG4_DG5NANNANT00.76ZZS2
531wtb-m2_B_DG4_DG5NANNANT00.85BBS1
541wtb-m3_B_DG4_DG5NANNANT01.23BBS1
551wtb-m4_B_DG4_DG5NANNANT01.29BBS1
561wtb-m5_B_DG4_DG5NANNANT00.77BB10
571wtb-m6_B_DG4_DG5NANNANT01.30BBS1
581wtb-m7_B_DG4_DG5NANNANT00.72BBS1
591wtb-m8_B_DG4_DG5NANNANT00.75ZZS2
601wtb-m9_B_DG4_DG5NANNANT00.84BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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