Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structural characteristics of enantiomorphic DNA: Crystal analysis of racemates of the D(CGCGCG) duplex

Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011vtu_A_DC1_DG2ZZZZZ1S180.20ZZ1S
021vtu_A_DG2_DC3ZZZZZS1750.14ZZS1
031vtu_A_DC3_DG4ZZZZZ1S620.14ZZ1S
041vtu_A_DG4_DC5ZZZZZS1450.20ZZS1
051vtu_A_DC5_DG6ZZZZZ1S110.29ZZ1S
061vtu_B_DC7_DG8ZZZZZ1S160.18ZZ1S
071vtu_B_DG8_DC9ZZZZZS1340.18ZZS1
081vtu_B_DC9_DG10ZZZZZ1S190.20ZZ1S
091vtu_B_DG10_DC11NANNANT00.27ZZS1
101vtu_B_DC11_DG12ZZZZZ2S610.22ZZ2S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N